View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_low_1 (Length: 631)
Name: NF13341_low_1
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 20 - 621
Target Start/End: Original strand, 40753761 - 40754359
Alignment:
| Q |
20 |
caaaccatcctcaatccgttaaccacctaattcttatttctagcctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagc |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40753761 |
caaaccatcctcaatccgttaaccacct---tcttatttctagcctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagc |
40753857 |
T |
|
| Q |
120 |
aattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacaca |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
40753858 |
aattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtaaaaaaagatgacttgaggattcctcatccctattgcacaaaacaca |
40753957 |
T |
|
| Q |
220 |
caaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccacttta |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40753958 |
caaaatggaagcctccggtggaagaacgttccttaacacaaggttatcttttgtagctatccggttacggagtgccttccaagcaaacgccaccacttta |
40754057 |
T |
|
| Q |
320 |
gatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccg |
419 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754058 |
gatggtgcggggctcttccacatgtcttcaaaaactcccttttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccg |
40754157 |
T |
|
| Q |
420 |
acttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaa |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754158 |
acttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaa |
40754257 |
T |
|
| Q |
520 |
caattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctccactagcaccccaacttccccgacttttgcctccctt |
619 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40754258 |
caattcctcttcccctacaaacaaatttcttctccatatgaacctccaatccactccctcctccactagcaccccaacttcccccacttttgcctccctt |
40754357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 64 - 621
Target Start/End: Complemental strand, 13854327 - 13853770
Alignment:
| Q |
64 |
ctccccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccact |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || ||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13854327 |
ctccccacaccaacaatcccaatgaacaaataaattcggaggggttataaaggaacaattcatccacaccatcaatctcaaccaaaccgacctcaccacc |
13854228 |
T |
|
| Q |
164 |
tcacaatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggt |
263 |
Q |
| |
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||||||||| | |||| || ||||| ||||||||||| ||||| ||||||||| | || || |||||||||| ||| ||||| | ||| |||| |
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| T |
13854227 |
tcacaatgtagaaataggtgacacgttgattcttcatccctattacacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggt |
13854128 |
T |
|
| Q |
264 |
tatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttc |
363 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||| ||||||||||||||| || || ||| |||||||||||| |||||||| |||| |||||| |
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| T |
13854127 |
tatcttttgttgctatccggttacgaagtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttc |
13854028 |
T |
|
| Q |
364 |
ctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccac |
463 |
Q |
| |
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||||||| ||||| ||||||||| | ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| | |||| |
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| T |
13854027 |
ctcttcaccccacccatcctcccttgaaaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccac |
13853928 |
T |
|
| Q |
464 |
acatcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacc |
563 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||| |
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| T |
13853927 |
acatcaagctcttgagtccacctcaactcttccaaatcctcattaagactaagcaacaattcgtcttcccacacaaacaaattccttctccatatgaacc |
13853828 |
T |
|
| Q |
564 |
tccaatccacaccctcctccactagcaccccaacttccccgacttttgcctccctttg |
621 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||| || ||||||||| |||| |
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|
| T |
13853827 |
tccaatccactccctcctccactcgcaccccaacttcccccacctttgcctccttttg |
13853770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
| Q |
303 |
caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc |
394 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||||| |||||| || |||| || |||||||||| | ||| || ||||||||| |
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| T |
8504763 |
caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc |
8504854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 468
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
| Q |
360 |
tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct |
459 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | |||||||| ||| || |||||||||||||| |||| ||| | |||||||| |||||||| |
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| T |
19471721 |
tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct |
19471622 |
T |
|
| Q |
460 |
ccacacatc |
468 |
Q |
| |
|
|||| |||| |
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| T |
19471621 |
ccactcatc |
19471613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
| Q |
238 |
tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac |
315 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||| |||||||| ||| | |||||||||||| ||||||||||||| |
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|
| T |
46641722 |
tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac |
46641645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 555
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
| Q |
400 |
ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa |
499 |
Q |
| |
|
||||||| || |||| ||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||||||||| |||| | || || |
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|
| T |
33291113 |
ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag |
33291212 |
T |
|
| Q |
500 |
tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca |
555 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||| |||| || | ||||||||| |
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|
| T |
33291213 |
tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca |
33291268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 25846307 - 25846259
Alignment:
| Q |
50 |
ttcttatttctagcctccccacaccaacaatcccaatgaacaaacaaat |
98 |
Q |
| |
|
||||||||||| ||||||||| |||| | ||||||||||||||||||| |
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|
| T |
25846307 |
ttcttatttctcccctccccactccaatactcccaatgaacaaacaaat |
25846259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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