View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_low_3 (Length: 561)
Name: NF13341_low_3
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 54137106 - 54137639
Alignment:
| Q |
13 |
tcatcattatctgcaagtcccattaagttctctgtaatggttgcaaaaccaagtaagaaaatgagaaacaacagacatactagtatttggtattgagaga |
112 |
Q |
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| T |
54137106 |
tcatcattatctgcaagtcccattaagttctctgtaatggttgcaaaacaaagtaagaaaatgagaaacaacagacatagtagtatttggtattgagaga |
54137205 |
T |
|
| Q |
113 |
agaaaactgtaccagatgatttgatactattactatcctgtggctgctcattcttgtcttctaatttagtactttcaagttcgtgttcagaggataccca |
212 |
Q |
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| T |
54137206 |
agaaaactgtaccagatgatttgatactattactatcctgtggctgctcattcttgtattctaatttagtactttcaagttcgtgttcagaggataccca |
54137305 |
T |
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| Q |
213 |
tttctgcaacgtgaagtgtggttgtgtacctattgaatcatataaagtagtacatgttatgttacaaataggaatcataaaaaagcaagtgaaaacacag |
312 |
Q |
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| T |
54137306 |
tttctgcaacgtaaagtgtggttgtgtacctattgaatcatataaagtagtacatgttatgttacaaaaaggcatcataaaaaagcaagtgaaaacacag |
54137405 |
T |
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| Q |
313 |
aatttaccatcttcattttcggttatcttcaatgttgtagcagctgaatggaatttgaggtccaataaagaactattaacgcgcgaagtacccatagaat |
412 |
Q |
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| T |
54137406 |
aatttaccatcttcattttcggttatcttcaatattgtagcagctgaatggaatttgaggtccaataaagaactattaacgcgcgaagtacccatagaat |
54137505 |
T |
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| Q |
413 |
atctagcacttgctaactccagccacccctgtgaatatcaggagcattgcatcatatctgaacttataaactgaaattatgaaattgtttgagaaagctt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54137506 |
atctagcacttgctaactccagccacccctgtgaatatcaggagcattgcatcatatctgaacttataaactgaaattattaaattgtttgagaaagctt |
54137605 |
T |
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| Q |
513 |
caataagtagaaatagcatatgcctcgtcaataa |
546 |
Q |
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| T |
54137606 |
caataagtagaaatagcatatgcctcgtcaataa |
54137639 |
T |
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