View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_low_4 (Length: 553)
Name: NF13341_low_4
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 21 - 539
Target Start/End: Complemental strand, 22363101 - 22362583
Alignment:
| Q |
21 |
gatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacgggggatttgtatgtaattccagcaggtactgtat |
120 |
Q |
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| T |
22363101 |
gatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacaggggatttgtatgtaattccagcaggtactgtat |
22363002 |
T |
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| Q |
121 |
tttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttaggtgatacttttcaggtacatatatgcat |
220 |
Q |
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| T |
22363001 |
tttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttaggtgatacttttcaggtacatatatgctt |
22362902 |
T |
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| Q |
221 |
ctataatttcacatgtttcacttacatattatccactttatgttaacttgttaccatgtttttctaacattcttcaattttatgtagcctttctatattg |
320 |
Q |
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| T |
22362901 |
ctataatttcacatgtttcactcacatattatccactttatgttatcttgttaccatgtttttctaacattcttcaattttatgtagcctttctatattg |
22362802 |
T |
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| Q |
321 |
gtggaggagataatcaacaatctgtgctcgctggattcggaccgacaattcttgaaactgcatttaatgtaagctattgcctaatgcagcaatattacaa |
420 |
Q |
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| T |
22362801 |
gtggaggagataatcaacaatctgtgcttgctggattcggaccgacaattcttgaaactgcatttaatgtaagctattgcctaatgtagcaatattacaa |
22362702 |
T |
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| Q |
421 |
tatatcaagtggatctaaattgtgtattattattaattatcacttataggaatcaagagcaatgatagagagaattttcaccaagaaacaagatggtcca |
520 |
Q |
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| T |
22362701 |
tatatcaagtgggtctaaattgtgtattattgttaattaccacttataggaatcaagaacaaagatagagagaatcttcaccaagaaacaagatggtcca |
22362602 |
T |
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| Q |
521 |
attgtgttcattgatgatg |
539 |
Q |
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| T |
22362601 |
attgtgttcattgatgatg |
22362583 |
T |
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