View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_low_6 (Length: 429)
Name: NF13341_low_6
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 157 - 410
Target Start/End: Complemental strand, 44516025 - 44515772
Alignment:
| Q |
157 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag |
256 |
Q |
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| T |
44516025 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag |
44515926 |
T |
|
| Q |
257 |
tttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattct |
356 |
Q |
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| T |
44515925 |
tttaaatcacaaccaacaacaaaggtgcctcatgaaaacaaaatccgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctataattct |
44515826 |
T |
|
| Q |
357 |
gctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt |
410 |
Q |
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| T |
44515825 |
gctcaaacagaaacggatcagaatcactaagacaacatcactgaaaattcaagt |
44515772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 44516190 - 44516052
Alignment:
| Q |
8 |
cacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaaccaaaagataactaaacaatcaaagccact |
107 |
Q |
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| T |
44516190 |
cacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgaccaaaagataactaaacaatcaaagccact |
44516091 |
T |
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| Q |
108 |
ccctattcaaacagcaaaccaaaaataaaccaccaccac |
146 |
Q |
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| T |
44516090 |
ccctatgcaaacagcaaaccaaaaataaaccaccaccac |
44516052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 192 - 410
Target Start/End: Original strand, 29120889 - 29121107
Alignment:
| Q |
192 |
tactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatga |
291 |
Q |
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||||||||||||||||||| ||| ||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| | ||||| | |
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| T |
29120889 |
tactcaaacccaatctgactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaaccaacaacaaagatgcctcacaa |
29120988 |
T |
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| Q |
292 |
aaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacagaaacagatcagaatcaccaagacaa |
391 |
Q |
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||||||||| | ||||||| ||| ||||| |||||||||||| ||| |||||||| || ||||||||||||||| | |||||||| ||||||||||| |
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| T |
29120989 |
aaacaaaattcaaagatcccttaaactaaagcaaacacaaacaaaagaaggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaa |
29121088 |
T |
|
| Q |
392 |
catcactgaaaattcaagt |
410 |
Q |
| |
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|| |||||||||||||| |
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| T |
29121089 |
caatgctgaaaattcaagt |
29121107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 1917618 - 1917452
Alignment:
| Q |
243 |
ctcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacgg |
342 |
Q |
| |
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|||| ||||||||||||| ||||| |||||||| ||| | ||||| |||||||||||| ||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
1917618 |
ctcaggaaccacagtttagatcacgaccaacaataaatatgcctcacaaaaacaaaatccaaagatcc-ccaaactaaagcaaacacaaacaagagacgg |
1917520 |
T |
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| Q |
343 |
acacctataattctgctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt |
410 |
Q |
| |
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|||||| || |||| |||| ||||| | |||||||| ||||||||||||| |||||| ||||||| |
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| T |
1917519 |
acacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagt |
1917452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1917863 - 1917806
Alignment:
| Q |
1 |
gaagtgccacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacac |
58 |
Q |
| |
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|||||| |||||| ||||||||||||| | || |||||||||| |||| ||||||||| |
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| T |
1917863 |
gaagtgacacaagcaaaacaatacaagaaacaccaggaaccaatagcaaaccaaacac |
1917806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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