View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13341_low_8 (Length: 354)
Name: NF13341_low_8
Description: NF13341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13341_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 30251041 - 30251237
Alignment:
| Q |
14 |
cttcttctcacaagccaaataacaaaagcctccactatatctctagattcagaatgttaatggcactttgcaatagttgagaagctttatatgagtagga |
113 |
Q |
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| T |
30251041 |
cttcttctcacaagccaaataacaaaagcctccactatatctctagattcagaatgttaatggcactttgcaatagttgagaagctttatatgagtggga |
30251140 |
T |
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| Q |
114 |
ttactatcaacgaactctcttttgcaatagcctcacaacatccatgagtaggagt----acccactctcatttctcaaatgtcaaagactccatcaa |
206 |
Q |
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| T |
30251141 |
atactatcaacgaactctcttttgcaatagcctcacaacatccatgagtcggagtacccacccactctcatttctcaaatgtcaaagactccatcaa |
30251237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 30251317 - 30251379
Alignment:
| Q |
282 |
gccttcgattttcttttttacaaaaaatgaataattggctttagtttcttttttattgatgat |
344 |
Q |
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| T |
30251317 |
gccttcgattttcttttttacaaaaaatgaataattggctttagtttcttttttattgatgat |
30251379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 50240466 - 50240286
Alignment:
| Q |
14 |
cttcttctcacaagccaaataacaaaagcctccactatatctctagattcagaatgttaatggcactttgcaatagttgagaagctttatatgagtagga |
113 |
Q |
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| T |
50240466 |
cttcttctcacaagccaagtaacataagcctccactgtatctccaacttcagaatttcaatggaatttggcaatagtagggaagctttatatgagtaaga |
50240367 |
T |
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| Q |
114 |
ttactatcaacgaactctcttttgcaatagcctcacaacatccatgagtaggagtacccactctcatttctcaaatgtcaa |
194 |
Q |
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| T |
50240366 |
ctgccatcaactaactaccttttgcaatagccttacaacatccatgagtaggagtacccactcccttttctcaaatgtcaa |
50240286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 24129752 - 24129574
Alignment:
| Q |
21 |
tcacaagccaaataacaaaagcctccactatatctctagattcagaatgttaatggcactttgcaatagttgagaagctttatatgagtaggattactat |
120 |
Q |
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| T |
24129752 |
tcacaagccaagtaacataagcctccactatatctccagcttcagcatttcaatggcattttgcactagttgaaaagctttatatgagtaa----actat |
24129657 |
T |
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| Q |
121 |
caacgaactctcttttgcaatagcctcacaacatccatgagtaggagtacccactctcatttctcaaatgtcaaagactccat |
203 |
Q |
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| T |
24129656 |
caatgaactcccttttgcaatagcctcgcaacatccatgagcacgagtacccactctcttctgtcaaatgtgaaagactccat |
24129574 |
T |
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