View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13342_low_1 (Length: 620)
Name: NF13342_low_1
Description: NF13342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13342_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 198 - 608
Target Start/End: Complemental strand, 37789878 - 37789475
Alignment:
| Q |
198 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgtggttccatatgcccattttggttctgatgatgtgtatta |
297 |
Q |
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| T |
37789878 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgtagttccatatgcccattttggttctgatgatgtgtatta |
37789779 |
T |
|
| Q |
298 |
tgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789778 |
tgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactt |
37789679 |
T |
|
| Q |
398 |
tagcctttccttctactacactccaatttagtttttccaatctatgtatggaa---caaaagcatataatagagtaactaatagtgtaaaataactgaga |
494 |
Q |
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| T |
37789678 |
tagcctttccttctactacactccaatttagtttttccaatctatgtatggaaaatcaaaagcatataatagagtaact----------aataactgata |
37789589 |
T |
|
| Q |
495 |
atataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaac |
594 |
Q |
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| T |
37789588 |
atataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacatagcgaac |
37789489 |
T |
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| Q |
595 |
ataaatgttgatga |
608 |
Q |
| |
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|||||||||||||| |
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| T |
37789488 |
ataaatgttgatga |
37789475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 198 - 443
Target Start/End: Complemental strand, 37800718 - 37800479
Alignment:
| Q |
198 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgtggttccatatgcccattttggttctgatgatgtgtatta |
297 |
Q |
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| T |
37800718 |
gcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcggctccatatgcccattttggttctgatg---tgcat-- |
37800624 |
T |
|
| Q |
298 |
tgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactt |
397 |
Q |
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| T |
37800623 |
-gcaaaaggttaatatttgatgaacgaatattgatttctgctccattgtaaaatgtcatcagcatcgcaccactaattccaattgctgttcccatcactt |
37800525 |
T |
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| Q |
398 |
tagcctttccttctactacactccaatttagtttttccaatctatg |
443 |
Q |
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| T |
37800524 |
tagcctttccttctgctagactccaattcaatttttccaatctatg |
37800479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 37790064 - 37789942
Alignment:
| Q |
21 |
gggacacggaccgttgccttttctttggggtttcagttcaatccacaaaaacgaggaagcaagttaacttaga---------agttgtcgtttgtggaag |
111 |
Q |
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| T |
37790064 |
gggacacggaccgttgccttttctttggggtttcagttcaatccacaaaaacgaggaagcaagttaacttagaaggcgaagcagttgtcgtttgtggaag |
37789965 |
T |
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| Q |
112 |
aagatgaaaacaagaggtaaaca |
134 |
Q |
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|||| |||||||||||||||||| |
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| T |
37789964 |
aagaagaaaacaagaggtaaaca |
37789942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 303 - 443
Target Start/End: Complemental strand, 37807976 - 37807836
Alignment:
| Q |
303 |
aaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcc |
402 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| ||| || |||| ||||||||| ||||| ||| |
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| T |
37807976 |
aaggttgatattggaagaccaaatattaatttccactcctttgtaaaatatcataagcattgccccaccaatgccaattactgttcctattactttggcc |
37807877 |
T |
|
| Q |
403 |
tttccttctactacactccaatttagtttttccaatctatg |
443 |
Q |
| |
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||||| ||||||| | ||||||||| |||||||||||||| |
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| T |
37807876 |
tttccctctactaatccccaatttagcttttccaatctatg |
37807836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 604
Target Start/End: Complemental strand, 37798361 - 37798286
Alignment:
| Q |
529 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttg |
604 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
37798361 |
agtgagtacccaaataatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttg |
37798286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 443
Target Start/End: Complemental strand, 37781400 - 37781213
Alignment:
| Q |
250 |
gcatgttgtggttccatatgcccattttggttctgatgatgtgtattatgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtaga |
349 |
Q |
| |
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|||||| ||||||||||| | ||||||||||| |||||||| || | | |||||| ||||| || | |||||||| ||||||| ||||| |||| | |
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| T |
37781400 |
gcatgtagtggttccataagtccattttggtt---atgatgtggat---gcataaggtttatattggaagtccaaatatcaatttctactcctctgtaaa |
37781307 |
T |
|
| Q |
350 |
atgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatg |
443 |
Q |
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|| ||| |||||| |||||||| || | |||| ||||||||| || || || ||||||||| ||| | ||||||||| |||||||||||||| |
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| T |
37781306 |
atatcatcaccattgccccactgatgctaattattgttcctattaccttggcttttccttctgctaatccccaatttagcttttccaatctatg |
37781213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 582
Target Start/End: Complemental strand, 37780876 - 37780823
Alignment:
| Q |
529 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttg |
582 |
Q |
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||||||||||||||| |||| |||||||||||||||| |||||| |||||||| |
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| T |
37780876 |
agtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttg |
37780823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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