View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13342_low_2 (Length: 410)
Name: NF13342_low_2
Description: NF13342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13342_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 36 - 410
Target Start/End: Original strand, 29005689 - 29006064
Alignment:
| Q |
36 |
tatgttgcctgggctggaacttttgtagaaccagcttgttaaagtttttaatttataagaagccacatacattgaccctcctccatctcttgcctgcaaa |
135 |
Q |
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| T |
29005689 |
tatgttggctgggctggaacttttgtggaaccagcttgttaaagattttcatttataagaagccacatacatggaccctcctccatatcttgcctgcaaa |
29005788 |
T |
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| Q |
136 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatcttgctacttttgtctctg |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29005789 |
atgcctttaatttcaatttgaaaagtttagttctggacttctattttgaatattggcctaccatttctattttaacctaatattgctacttttgtctctg |
29005888 |
T |
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| Q |
236 |
ctactaagaaaatcaccatgtgcccatgtcttccatgaagcaccaaattagaaaagatacactcattcctcacttcccatagagccactttcccaatgag |
335 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29005889 |
ctactaagaaaatcaccatgtgcctatgtcttccatgaagcaccaaattagaaaagatacactcattcctcacttcccatagagccactttcccaatgag |
29005988 |
T |
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| Q |
336 |
gagtaaaatgag-nnnnnnnngattactagcataaccataggcacctccaagtacccatactatacatctcatatc |
410 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29005989 |
gagtaaaatgagaaaaaaaaagattactagcataaccataggcacctccaaatacccatactatacatctcatatc |
29006064 |
T |
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