View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_high_4 (Length: 400)
Name: NF13343_high_4
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 51052610 - 51052404
Alignment:
| Q |
1 |
gttttgaaaccttaaacaatgctttaaaacacccatcagcaacgaattcacattgacggtttcattccaaattacaatgaagtgaatcatcagaagtgtt |
100 |
Q |
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| T |
51052610 |
gttttgaaaccttaaacaatgctttaaaacacccatcagcaacgaattcacattgacggtttcattccaaattacaatgaagtgaatcatcagaagtgtt |
51052511 |
T |
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| Q |
101 |
tcaaagcatatcatataatcatcaaaagcgtttcaatgtctgtagatccaacaaagctaaacaagtcttaaaaattatttgtattccaaattactataaa |
200 |
Q |
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| T |
51052510 |
tcaaagcatatcatataatcatcaaaagcgtttcaatgtctgtagatccaacaaagctaaacaagtcttaaaaattatttgtattccaaattactataaa |
51052411 |
T |
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| Q |
201 |
acgattc |
207 |
Q |
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||||||| |
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| T |
51052410 |
acgattc |
51052404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 51052298 - 51052234
Alignment:
| Q |
320 |
ttgtatattacatataaacaattgctatagaggttttgatcaatgatgcagccttgtattcctat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51052298 |
ttgtatattacatataaacaattgctatagaggttttgatcaatgatgcagccttgtattcctat |
51052234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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