View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_high_7 (Length: 288)
Name: NF13343_high_7
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_high_7 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 31061806 - 31061881
Alignment:
| Q |
152 |
aaatatcatgaatgccatttgcattagttaaagcaacga--gtgttaattagtatatcacatgtattatagttgag |
225 |
Q |
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| T |
31061806 |
aaatatcatcaatgtcatttgcattagtcaaagcaacgatagtgttaattagtatatcacatgtattatagttgag |
31061881 |
T |
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Target: scaffold0202 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17021 - 16977
Alignment:
| Q |
16 |
acaattgaagagtgttagggaggctattcctgcagcaaaatctaa |
60 |
Q |
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| T |
17021 |
acaattgaagagcgttagggagactattattgcagcaaaatctaa |
16977 |
T |
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