View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_high_8 (Length: 251)
Name: NF13343_high_8
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_high_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 6272919 - 6272684
Alignment:
| Q |
16 |
caaatgcttgaaggtaactcggttacatcctcacagtgatcaagcgtgagctctgagatgttagggaagatatcggcgatgtttgaatcttttccttcaa |
115 |
Q |
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| T |
6272919 |
caaatgcttgaaggtaactcggttacatcctcacagtgatcaagcgtgagctctgagatgttagggaagatatcggcgatgtttgaatcttttccttcaa |
6272820 |
T |
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| Q |
116 |
gactgttgttgatcttacaaaggactataaacaatttcctcaagctttccatgactatgcctgataagtgtgagatggaaactttttcaaaccaaaggct |
215 |
Q |
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| T |
6272819 |
gactgttgttgatcttacaaaggactataaacaatttcctcaagctttccatgactatgcctgataagtgtgggatggaaactttttcaaaccaaaggct |
6272720 |
T |
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| Q |
216 |
cctcaagttggttaaattcttgaaaaccgatatatt |
251 |
Q |
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| T |
6272719 |
cctcaagttggttaaattcttgaaaaccgatatatt |
6272684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 6264093 - 6264040
Alignment:
| Q |
189 |
gatggaaactttttcaaaccaaaggctcctcaagttggttaaattcttgaaaac |
242 |
Q |
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| T |
6264093 |
gatggaaactttttcaagccacaggcttctcaagttggccaaattgttgaaaac |
6264040 |
T |
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