View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13343_low_1 (Length: 717)

Name: NF13343_low_1
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13343_low_1
NF13343_low_1
[»] chr6 (3 HSPs)
chr6 (406-707)||(1731818-1732119)
chr6 (18-153)||(1731439-1731574)
chr6 (223-360)||(1731634-1731772)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 406 - 707
Target Start/End: Original strand, 1731818 - 1732119
Alignment:
Q  406 gtgttgcaagtgttatgatttgtgatatagatgttgtttgaggtgtttgatgtagaaaagagtgtaaattgatgaggnnnnnnnnnnnnnnnnnnnnnnn 505  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                           
T  1731818 gtgttgcaagtattatgatttgtgatatagatgttgtttgaggtgtttgatgtagaaaagagtgtaaattgatgaggtttttaattttttgaatttttct 1731917  T
Q  506 gaatgaaagcaggaaggtcaatgatgagcatggaggaaggctcaaagaggagacctttctttagctcacctgatgaactgtatgatgaggagtactacga 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1731918 gaatgaaagcaggaaggtcaatgatgagcatggaggaaggctcaaagaggagacctttctttagctcacctgatgaactgtatgatgaggagtactacga 1732017  T
Q  606 ggagcagtcaccggagaagaagcgccgcctcacttccgagcaggttggttgcttgctttctttgatgaatgaatttggatatgtttttcattatgatgat 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1732018 ggagcagtcaccggagaagaagcgccgcctcacttccgagcaggttggttgcttgctttctttgatgaatgaatttggatatgtttttcactatgatgat 1732117  T
Q  706 gt 707  Q
    ||    
T  1732118 gt 1732119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 1731439 - 1731574
Alignment:
Q  18 aaaaatggtatttgtttggatggtgggacacctgaaactcacacacaattgagaagttcaggttcggacccaagtgaaggtgtttagtataacaatattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1731439 aaaaatggtatttgtttggatggtgggacacctgaaactcacacacaactgagaagttcaggtttggacccaagtgaaggtgtttagtataacaatattg 1731538  T
Q  118 attttatgagttgagttacgtcttatggacagatgg 153  Q
    |||||||||||||||||| |||||||||||||||||    
T  1731539 attttatgagttgagttaggtcttatggacagatgg 1731574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 1731634 - 1731772
Alignment:
Q  223 gtaaaagaagcaacttgattttgtatcaaatttgggcaaacnnnnnnnnngaa-gatatgatttgatttgagtttttgttaaagaaagcaacttggttgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||||||||||||||||||    
T  1731634 gtaaaagaagcaacttgattttgtatcaaatttgggcaaacaaaaaaaaaaaaagatatgatttgatttgagtttttgttaaagaaagcaacttggttgt 1731733  T
Q  322 gcatcacaaaattaggctgtgagaaaatgaattagaata 360  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1731734 gcatcacaaaattaggctgtgagaaaatgaattagaata 1731772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University