View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_low_10 (Length: 215)
Name: NF13343_low_10
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 28532495 - 28532292
Alignment:
| Q |
1 |
gtctttctcattatcatcgtattcaatatcacgtcctccattcatgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28532495 |
gtctttctcgttatcatcgtattcaatatcacgtcctccattcatgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggt |
28532396 |
T |
|
| Q |
101 |
ttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
28532395 |
ttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtcttcctttgataaagcttgtcctaaaaaatcgctggggctatagtt |
28532296 |
T |
|
| Q |
201 |
atga |
204 |
Q |
| |
|
|||| |
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| T |
28532295 |
atga |
28532292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 29021430 - 29021373
Alignment:
| Q |
47 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt |
104 |
Q |
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||||||||| | ||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
29021430 |
acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
29021373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 6588694 - 6588813
Alignment:
| Q |
48 |
cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag |
147 |
Q |
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|||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||| | ||| ||||| || |||||||||||||||||||||||||| |
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| T |
6588694 |
cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaag |
6588793 |
T |
|
| Q |
148 |
gggaggtcttcctttgacaa |
167 |
Q |
| |
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| | ||||||||||||||| |
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| T |
6588794 |
gaaacgtcttcctttgacaa |
6588813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 51763815 - 51763962
Alignment:
| Q |
52 |
acatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaagggga |
151 |
Q |
| |
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|||| ||||||| || ||||||||||| ||||||||||||| ||||| |||| | ||| || || |||||||||||||||||| | |||||||||| | |
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| T |
51763815 |
acattttattgattcgttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaa |
51763914 |
T |
|
| Q |
152 |
ggtcttcctttgacaaagcttgtcctaaaaaattgctggggctatagt |
199 |
Q |
| |
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||||||| ||||| || ||||||||| ||| |||| |||||||||| |
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|
| T |
51763915 |
ggtcttcttttgaaaaggcttgtccttcaaatttgcacgggctatagt |
51763962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 21833749 - 21833878
Alignment:
| Q |
48 |
cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag |
147 |
Q |
| |
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||||| || |||||| |||||| |||||||| |||||||||||||||||| ||||| || ||| |||| | |||||||| |||||| |||||||||| |
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| T |
21833749 |
cttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaag |
21833848 |
T |
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| Q |
148 |
gggaggtcttcctttgacaaagcttgtcct |
177 |
Q |
| |
|
|| |||||||||||| || | ||||||||| |
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| T |
21833849 |
ggaaggtcttcctttaacgaggcttgtcct |
21833878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 53761227 - 53761357
Alignment:
| Q |
47 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa |
146 |
Q |
| |
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|||||| || ||||| | || ||||||||||| ||||||||||||| |||| |||| | |||| ||||| ||| ||||||||||| ||||||||| |
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|
| T |
53761227 |
acttcagattttattaagtcgttggtgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaa |
53761326 |
T |
|
| Q |
147 |
ggggaggtcttcctttgacaaagcttgtcct |
177 |
Q |
| |
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|| | ||||||||||||||| |||||||| |
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| T |
53761327 |
aggaatgtcttcctttgacaagtcttgtcct |
53761357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 1601123 - 1601088
Alignment:
| Q |
63 |
actcattggtgagtttcaagggtttgacttgtcttg |
98 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
1601123 |
actcattggtgagtttgaagggtttgacttgtcttg |
1601088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 10615325 - 10615207
Alignment:
| Q |
47 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaa |
146 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||||||| |||| | | | | ||||| || || | ||| | ||| ||||||||| |
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| T |
10615325 |
acttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaa |
10615226 |
T |
|
| Q |
147 |
ggggaggtcttcctttgac |
165 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
10615225 |
gggtgggtcttcctttgac |
10615207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 19467870 - 19468010
Alignment:
| Q |
48 |
cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag |
147 |
Q |
| |
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|||| ||| |||||||||||||| ||||||| ||||||||||||| |||| || || | | | ||||| |||||||| |||||||| |||||||| | |
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| T |
19467870 |
cttcgcattttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacg |
19467969 |
T |
|
| Q |
148 |
gggaggtcttcctttgacaaagcttgtcctaaaaaattgct |
188 |
Q |
| |
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|| ||| || |||||||| | ||||||||| ||| |||||| |
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|
| T |
19467970 |
ggaagggctacctttgacgaggcttgtcctcaaatattgct |
19468010 |
T |
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