View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_low_3 (Length: 423)
Name: NF13343_low_3
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 31998547 - 31998931
Alignment:
| Q |
16 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtcta |
115 |
Q |
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| T |
31998547 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtcta |
31998646 |
T |
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| Q |
116 |
atgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctcttt |
215 |
Q |
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| T |
31998647 |
atgttagtttaatttatgttaagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctcttt |
31998746 |
T |
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| Q |
216 |
gattacacaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtt |
315 |
Q |
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| T |
31998747 |
gattacacaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtt |
31998846 |
T |
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| Q |
316 |
tgtttttgtctaaccggcacatatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatc |
400 |
Q |
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| T |
31998847 |
tgtttttgtctaaccggcacatatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatc |
31998931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
84 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
183 |
Q |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
184 |
aattgtggta |
193 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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