View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13343_low_4 (Length: 406)
Name: NF13343_low_4
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13343_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 26595429 - 26595818
Alignment:
| Q |
7 |
aaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaaggattaagaatcattacaaatgtgccaattgccacattatcatcg |
106 |
Q |
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| T |
26595429 |
aaaagtttatcctctttgattattggtgggtctattgtatttgggacagaaagaaggattaagaatcattacaaatgtgccaattgccacattatcatcg |
26595528 |
T |
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| Q |
107 |
aaaatatcatagaatttttgtgaacacacacaaagtcgtgagcatcttagtttttatgtaaaattgacaaacttaaaggtttaattgttatataaagata |
206 |
Q |
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| T |
26595529 |
aaaatatcatagaatttttgtgaacacacacaaagtcgtgagcatcttagtttttatgtaaaattgacaaacttaaaggtttaattgttatataaagata |
26595628 |
T |
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| Q |
207 |
tttatgcaaattagactaggtaggtagacctaattcaattggtagagcatgtgacaagatcaatgtttttggaatcaattctaaaccgctgaactttgta |
306 |
Q |
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| T |
26595629 |
tttatgcaaattagactagctagctagacttaattcaattggtggagcttgtgacgagatcaaggtttttggaatcaattctaaaccgttgaactttgtc |
26595728 |
T |
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| Q |
307 |
taattgtttaattaaactgtgga--nnnnnnnnnctttcttaaactgtggaaattattgagaatatatccgattaggtgcatcacaggtt |
394 |
Q |
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| T |
26595729 |
taattgtttaattaaactgtggatttttttttttctttcttaaactgtggaaattattgagaatatatccgattaggtgcatcactggtt |
26595818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 26609639 - 26609681
Alignment:
| Q |
344 |
ttaaactgtggaaattattgagaatatatccgattaggtgcat |
386 |
Q |
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| T |
26609639 |
ttaaactgtggaaattatcgagaatatatccgtttacgtgcat |
26609681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 26601636 - 26601680
Alignment:
| Q |
344 |
ttaaactgtggaaattattgagaatatatccgattaggtgcatcac |
389 |
Q |
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| T |
26601636 |
ttaaactgtggaaatcattgagaatatatccg-ttacgtgcatcac |
26601680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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