View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13343_low_6 (Length: 296)

Name: NF13343_low_6
Description: NF13343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13343_low_6
NF13343_low_6
[»] chr5 (3 HSPs)
chr5 (39-296)||(28532508-28532765)
chr5 (178-233)||(29021558-29021613)
chr5 (177-230)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (122-296)||(6588466-6588637)
chr6 (124-235)||(6416827-6416938)
[»] chr3 (3 HSPs)
chr3 (124-235)||(13469859-13469970)
chr3 (113-235)||(51763574-51763696)
chr3 (185-230)||(513925-513970)
[»] chr1 (1 HSPs)
chr1 (113-224)||(19467621-19467732)
[»] chr4 (3 HSPs)
chr4 (124-224)||(21833493-21833593)
chr4 (136-225)||(532589-532681)
chr4 (137-235)||(53761012-53761110)
[»] chr7 (1 HSPs)
chr7 (130-224)||(10615459-10615553)
[»] chr8 (1 HSPs)
chr8 (177-230)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 39 - 296
Target Start/End: Complemental strand, 28532765 - 28532508
Alignment:
Q  39 cgacctcgacctcatacttaaataccccttaaattatatctctatgatagagactcggactcgtagttataacaatgggatagaggctctctcactttca 138  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  28532765 cgacctcgacctcagactaaaataccccttaaattatatctctatgatagagactcgaactcgtagttataacaatggggtagaggctctctcactttca 28532666  T
Q  139 cttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 238  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532665 cttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 28532566  T
Q  239 ttgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagag 296  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28532565 ttgatggttataagcaattattaaccgatgcaggcattgcttctgctctccgtgagag 28532508  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 29021613 - 29021558
Alignment:
Q  178 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 233  Q
    |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  29021613 atcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagt 29021558  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 28673512 - 28673565
Alignment:
Q  177 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 230  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||||| ||||    
T  28673512 catcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaaga 28673565  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 6588466 - 6588637
Alignment:
Q  122 aggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagct 221  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  6588466 aggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagct 6588565  T
Q  222 tctccaagaagtcaacattgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagag 296  Q
    |||||| |||||||||||   ||||| |   |    ||||||| |||||| ||||||||||||||||||||||||    
T  6588566 tctccaggaagtcaacatatttggttgt---cgtgaattaaccaatgcaggcattgcttctgctctccgtgagag 6588637  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 6416938 - 6416827
Alignment:
Q  124 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 223  Q
    ||||| |||||| ||||| | ||||||||||| ||||||||||||   |||||  | ||||||||||| |||||||| || |||  ||||||||||||||    
T  6416938 gctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagcttc 6416839  T
Q  224 tccaagaagtca 235  Q
    || |||||||||    
T  6416838 tcgaagaagtca 6416827  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 13469859 - 13469970
Alignment:
Q  124 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 223  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||   ||||| || ||||||| ||||||||||||||| |||  ||||||||||||||    
T  13469859 gctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagcttc 13469958  T
Q  224 tccaagaagtca 235  Q
    || |||||||||    
T  13469959 tcgaagaagtca 13469970  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 51763574 - 51763696
Alignment:
Q  113 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 212  Q
    |||||||| | || || |||||| | ||| ||||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  ||||    
T  51763574 atgggatacaagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaa 51763673  T
Q  213 ctgtaagcttctccaagaagtca 235  Q
    |||||||||||||||||| ||||    
T  51763674 ctgtaagcttctccaagatgtca 51763696  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 513925 - 513970
Alignment:
Q  185 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 230  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 513970  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 19467621 - 19467732
Alignment:
Q  113 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 212  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| | | || ||||  |||| |||||||| | |||    
T  19467621 atggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaa 19467720  T
Q  213 ctgtaagcttct 224  Q
     |||||||||||    
T  19467721 ttgtaagcttct 19467732  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 21833493 - 21833593
Alignment:
Q  124 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 223  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||||| | |  || ||||||||||    
T  21833493 gctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttc 21833592  T
Q  224 t 224  Q
    |    
T  21833593 t 21833593  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 532681 - 532589
Alignment:
Q  136 tcacttctcaaactccgcaaggttaatctttcttc-ctttcc--catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctc 225  Q
    |||||| |||||||||||||||||||||||||| | | |  |  ||||||| ||||||| ||||||||||||||||  || ||||||||||||    
T  532681 tcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 53761012 - 53761110
Alignment:
Q  137 cacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 235  Q
    ||||| |||||||||| |||||||||||||||  |||  |||| | | | |||||||||||||||||||| |  || ||||| ||||| ||||| ||||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtca 53761110  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 10615553 - 10615459
Alignment:
Q  130 tcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 224  Q
    |||||||||||| | ||||||||||||||||||||||||   |||| ||| ||||| ||||| ||| |||||||| ||  |||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttct 10615459  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 18314876 - 18314929
Alignment:
Q  177 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 230  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||    
T  18314876 catcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

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