View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13344_high_4 (Length: 364)
Name: NF13344_high_4
Description: NF13344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13344_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 44516025 - 44515832
Alignment:
| Q |
160 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag |
259 |
Q |
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| T |
44516025 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag |
44515926 |
T |
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| Q |
260 |
tttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctat |
353 |
Q |
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| T |
44515925 |
tttaaatcacaaccaacaacaaaggtgcctcatgaaaacaaaatccgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctat |
44515832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44516203 - 44516052
Alignment:
| Q |
1 |
acaggaagtgccaca--agtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaaccaaaagataactaaac |
98 |
Q |
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| T |
44516203 |
acaggaagtgccacacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgaccaaaagataactaaac |
44516104 |
T |
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| Q |
99 |
aatcaaagccactccctattcaaacagcaaaccaaaaataaaccaccaccac |
150 |
Q |
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| T |
44516103 |
aatcaaagccactccctatgcaaacagcaaaccaaaaataaaccaccaccac |
44516052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 29120889 - 29121045
Alignment:
| Q |
195 |
tactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatga |
294 |
Q |
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||||||||||||||||||| ||| ||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| | ||||| | |
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| T |
29120889 |
tactcaaacccaatctgactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaaccaacaacaaagatgcctcacaa |
29120988 |
T |
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| Q |
295 |
aaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacct |
351 |
Q |
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| T |
29120989 |
aaacaaaattcaaagatcccttaaactaaagcaaacacaaacaaaagaaggacacct |
29121045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 1917618 - 1917514
Alignment:
| Q |
246 |
ctcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacgg |
345 |
Q |
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|||| ||||||||||||| ||||| |||||||| ||| | ||||| |||||||||||| ||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
1917618 |
ctcaggaaccacagtttagatcacgaccaacaataaatatgcctcacaaaaacaaaatccaaagatcc-ccaaactaaagcaaacacaaacaagagacgg |
1917520 |
T |
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| Q |
346 |
acacct |
351 |
Q |
| |
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|||||| |
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| T |
1917519 |
acacct |
1917514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1917867 - 1917806
Alignment:
| Q |
1 |
acaggaagtgccacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacac |
62 |
Q |
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|||||||||| |||||| ||||||||||||| | || |||||||||| |||| ||||||||| |
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| T |
1917867 |
acaggaagtgacacaagcaaaacaatacaagaaacaccaggaaccaatagcaaaccaaacac |
1917806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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