View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13345_high_2 (Length: 281)
Name: NF13345_high_2
Description: NF13345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13345_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 14984269 - 14984029
Alignment:
| Q |
11 |
gtgagatgaagaaaatttacgcaagtcttgaaagtttttctaaaacatgtttttatcactccacttcttannnnnnnaaaggtatcactccactttttat |
110 |
Q |
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| T |
14984269 |
gtgagatgaagaaaatttacgcaagtcttgaaagtttttctaaaacatgtttt-atcactccacttcttatttttttaaaggtatcactccactttttat |
14984171 |
T |
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| Q |
111 |
ttccactcttcagccaccaaattatcctcatattcatatcccctcacaaagttaattttgattagaagaaattaaacaaagttccaaggattatttttat |
210 |
Q |
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| T |
14984170 |
ttccactctccagccaccaaattatcctcatattcatatcccctcacaaagttaattttgattagaagaaattaaacaaagttccaaggattatttttat |
14984071 |
T |
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| Q |
211 |
cacacatggaaaataattttttatttggagaaataactggta |
252 |
Q |
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| T |
14984070 |
cacacacggaaaatatttttttatttggagaaataactggta |
14984029 |
T |
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