View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13345_low_1 (Length: 462)
Name: NF13345_low_1
Description: NF13345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13345_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 80 - 451
Target Start/End: Complemental strand, 18677721 - 18677353
Alignment:
| Q |
80 |
atttaagaaacgaagttttcccttctctatggttaaacccaactcttccaccatgaaacttagaagaagttgagcaagcaaaactcgatattgaacaacc |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
18677721 |
atttaagaaacgaagttttcccttctctatggttaaacccaactcttccaccatgaagcttagaag---ttgagcaagcaaaacttgatattgaacaacc |
18677625 |
T |
|
| Q |
180 |
ctttgagactctttgaagggaaaaggaagagcaagtgcgtaagagaggttggaaagatagaggtttatgcttttgtttcatgggagtgaatggagagaaa |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18677624 |
ctttgagaccctttgaagggaaaaggaagagcgagtgcgtaagagaggttggaaagatagaggtttatgcttttgtttcatgggagtgaatggagagaaa |
18677525 |
T |
|
| Q |
280 |
acgggaatggaagccattgaaagaggagagagggggtgtgaagaggaaggatggggggtgtgaagattgaagaggcagaagatgaggggattatgaaaat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18677524 |
acgggaatggaagccattgaaagaggagagagggggtgtgaagaggaatgagggggggtgtgaagattgaagaggcagaagatgaggggattatgaaaat |
18677425 |
T |
|
| Q |
380 |
gatattcgcatatatacgtacgagtgtgaatgagaacaaatgaaagtagggacttgtgatgagagtgatgat |
451 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18677424 |
gatattcgcatatatacgtccgagtgtgaatgagaacaaatgaaagtagggacttgtgatgagagtgatgat |
18677353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University