View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13345_low_2 (Length: 302)
Name: NF13345_low_2
Description: NF13345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13345_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 37419096 - 37419384
Alignment:
| Q |
1 |
cactatgtccaggtccccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgctag |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37419096 |
cactatgtccaggtccccattttttacaatctaactcaaatggagctattctctaacttagctggtaaaagttggcctaagaagtggacgtggatgctag |
37419195 |
T |
|
| Q |
101 |
aaatgcttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatccatttcctcatatttattttgtttaactcttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419196 |
aaatgcttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcgcatataatttcatccatttcctcatatttattttgtttaactcttcc |
37419295 |
T |
|
| Q |
201 |
tctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggatagacgatgatgatg |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419296 |
tctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggatagacgatgatgatg |
37419384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 53059791 - 53060073
Alignment:
| Q |
1 |
cactatgtccaggtccccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgctag |
100 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
53059791 |
cactatttccaagtccccattttttacaatctaactcaaatggagctattctctaacttagagggtaaaagttggcctaagaagtggatgtggatgctag |
53059890 |
T |
|
| Q |
101 |
aaatgcttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatccatttcctca-----tatttattttgtttaact |
195 |
Q |
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|
|||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||| | || ||||||| | |||||||||||||||||| |
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| T |
53059891 |
aaatgcttcagcacactccaaagcttcaacatcttatcattcatgaggtttcacatataatctgattgatttcctgatatgttatttattttgtttaact |
53059990 |
T |
|
| Q |
196 |
cttcctctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggataga |
278 |
Q |
| |
|
|| ||||| | |||||||||| |||||| |||||| ||||||||||||||||||||| | ||||||| |||||| ||||||| |
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| T |
53059991 |
ctacctctacctatcttaacttttgttttctgtttttggtggaaatttacttattgttaataggagatagaaaatgggataga |
53060073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 53071829 - 53072094
Alignment:
| Q |
16 |
cccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgctagaaatgcttcaaaaca |
115 |
Q |
| |
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|||||||| ||||||| |||||||||||||||| |||||||||||| | ||||||||||||||| ||||||| || ||||||||||||||||| ||| |
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|
| T |
53071829 |
cccattttttacaatccaactcaaatggagctattctctaacttagagcataaaagttggcctaaaaagtggatgtcattgctagaaatgcttcaacaca |
53071928 |
T |
|
| Q |
116 |
gtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatccatttcctca-----tatttattttgtttaactcttcctctgcatatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| || ||||||| | ||||||||||||||||| | ||||| | ||| |
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| T |
53071929 |
gtccaaagcttcaacatcttatcattcatgaggtttcacatataatttgattgatttcctgatattttatttattttgtttaacattacctctaccgatc |
53072028 |
T |
|
| Q |
211 |
ttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggataga |
278 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||||||| | ||||||| |||||| ||||||| |
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| T |
53072029 |
ttaacttttgtttctgttttt--gtggaaatttacttattgttaataggagatagaaaatgggataga |
53072094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 53062817 - 53062966
Alignment:
| Q |
13 |
gtccccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgctagaaatgcttcaaa |
112 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||| ||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53062817 |
gtccccatttt-tacaatctatctcaaatggtgctattctctaagtttgagggtaaaagttggactaagaagtggacgtggatgctagaaatgcttcagc |
53062915 |
T |
|
| Q |
113 |
acagtccaaagcttcaacatcttatcatttacgaggtttcacatataattt |
163 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||||||||||||||| |
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|
| T |
53062916 |
acagtccaaagctttaacatcttatcattcatgaggtttcacatataattt |
53062966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 53062979 - 53063059
Alignment:
| Q |
198 |
tcctctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggataga |
278 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53062979 |
tcctctacatatcttaacttttgtttcttgttttgggtggaaatttacttattatttacaggagattgaaaataggataga |
53063059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 53985030 - 53984970
Alignment:
| Q |
81 |
gaagtggacgtggatgctagaaatgcttcaaaacagtccaaagcttcaacatcttatcatt |
141 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | ||||| || ||||||||||||| |||| |
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| T |
53985030 |
gaagtggaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccatt |
53984970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 6688012 - 6688291
Alignment:
| Q |
6 |
tgtccaggtccccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgctagaaatg |
105 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
6688012 |
tgtccatgtccccatttttcacaatttaactcaactggagctattctctaacttaaagggtaaaagttggcctgagaagtggaagtggatggtagaaatg |
6688111 |
T |
|
| Q |
106 |
cttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatccatttcctcatat---ttattttgtttaactcttcct- |
201 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| | ||||||||||||||| ||| || ||||| | |||| ||||||||||||||||| ||| |
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|
| T |
6688112 |
cttcaacacagtcccaagcttcaacatcttatcattcatgaggtttcacatatactttgattgatttcatgatattagttattttgtttaactctacctt |
6688211 |
T |
|
| Q |
202 |
---ctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggataga |
278 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
6688212 |
tacctatatatcttaactcttgttttgtgttttgggtggaaatttacttattgtttacaggagatagaaaatgggataga |
6688291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 31014373 - 31014651
Alignment:
| Q |
1 |
cactatgtccaggtccccattttctacaatctaactcaaatggagctactctctaacttagcgggtaaaagttggcctaagaagtggacgtggatgc--- |
97 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||| |||||||| |
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|
| T |
31014373 |
cactgtgtccaagtccccattttttacaatctaactcaaatggagctattctctaacttaaagcataaaacttggcctaacaagtggaagtggatgctag |
31014472 |
T |
|
| Q |
98 |
---tagaaatgcttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatccatttcctcatatttattttgtttaac |
194 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
31014473 |
aagtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcataaggtttcacatataatttcatgatgtt----ttatttattttgtttaac |
31014568 |
T |
|
| Q |
195 |
tcttcctctgc--atatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaaaataggat |
275 |
Q |
| |
|
||| ||||| | ||||||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
31014569 |
tctacctctacctatatcttaacttttgttttctgtttttggtggaaatttacatattgttaacaggagatagaaaatgggat |
31014651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 278
Target Start/End: Original strand, 34036275 - 34036471
Alignment:
| Q |
68 |
aaagttggcctaagaagtggacgtggatgctagaaatgcttcaaaacagtccaaagcttcaacatcttatcatttacgaggtttcacatataatttcatc |
167 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
34036275 |
aaagttggcctaataagtggaggtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggtttcacatataattt---- |
34036370 |
T |
|
| Q |
168 |
catttcctcatatttattttgtttaactcttcctctgcatatcttaactcttgtttcttgttttgggtggaaatttacttattgtttacaggagattgaa |
267 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| ||| |
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|
| T |
34036371 |
----------tatttattttgtttaactctacctctacctatcttaacttttgttttctgtttttggtggaaatttacttattgttaacaggagatagaa |
34036460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 34036220 - 34036262
Alignment:
| Q |
6 |
tgtccaggtccccattttctacaatctaactcaaatggagcta |
48 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34036220 |
tgtccaagtccccattatttacaatctaactcaaatggagcta |
34036262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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