View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13345_low_4 (Length: 211)

Name: NF13345_low_4
Description: NF13345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13345_low_4
NF13345_low_4
[»] chr6 (9 HSPs)
chr6 (1-125)||(26890735-26890859)
chr6 (11-124)||(27713847-27713960)
chr6 (22-111)||(26853961-26854050)
chr6 (22-109)||(26631760-26631847)
chr6 (22-109)||(26737735-26737822)
chr6 (11-111)||(27651942-27652041)
chr6 (32-124)||(26966390-26966482)
chr6 (11-107)||(27422298-27422394)
chr6 (37-125)||(31289542-31289630)
[»] scaffold0349 (1 HSPs)
scaffold0349 (11-124)||(17984-18097)
[»] chr8 (1 HSPs)
chr8 (11-127)||(29269713-29269829)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-107)||(64969-65065)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26890859 - 26890735
Alignment:
Q  1 catgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcgg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890859 catgtgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcgg 26890760  T
Q  101 tgttgttgctgtgacacaggttctg 125  Q
    |||||||||||||||||| ||||||    
T  26890759 tgttgttgctgtgacacaagttctg 26890735  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 27713847 - 27713960
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 110  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||||||    
T  27713847 tgctgctacacaagttctgtctcagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgct 27713946  T
Q  111 gtgacacaggttct 124  Q
    |  ||||| |||||    
T  27713947 gctacacaagttct 27713960  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 26854050 - 26853961
Alignment:
Q  22 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctg 111  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  26854050 aagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctg 26853961  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  22 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 109  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  22 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 109  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 110  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  32 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 124  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 27422298 - 27422394
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgtt 107  Q
    |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||||||||| | ||||||||    
T  27422298 tgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtt 27422394  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  37 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 125  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

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Target: scaffold0349 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 18097 - 17984
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 110  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||||||    
T  18097 tgctgctacacaagttctgtctcagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgct 17998  T
Q  111 gtgacacaggttct 124  Q
    |  ||||| |||||    
T  17997 gctacacaagttct 17984  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 29269713 - 29269829
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 110  Q
    |||||||||| |||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||    
T  29269713 tgctgctacacaagttctgtctctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgct 29269812  T
Q  111 gtgacacaggttctgct 127  Q
    |  ||||| ||||||||    
T  29269813 gctacacaagttctgct 29269829  T

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Target: scaffold0003 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 65065 - 64969
Alignment:
Q  11 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgtt 107  Q
    |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||||||||| | ||||||||    
T  65065 tgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtt 64969  T

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