View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13346_high_10 (Length: 508)
Name: NF13346_high_10
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 22 - 492
Target Start/End: Original strand, 33696222 - 33696692
Alignment:
| Q |
22 |
tctaatgtgaaaaagaacaccataatggactgttcacaactggatagtactcatgcagcctcattttctcaaccactccaccaccaaagtgtgctacccc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696222 |
tctaatgtgaaagagaacaccataatggactgttcacaactggatagtactcatgcagcctcattttctcaaccactccaccaccaaagtgtgctacccc |
33696321 |
T |
|
| Q |
122 |
actttttagacccacaacaagtctctttcagttcacaatcatgtttgaataatgaacaaagtcaaggtggtactattaccaactttgcaacagttgatga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696322 |
actttttagacccacaacaagtctctttcagttcacaatcatgtttgaataatgaacaaagtcaaggtggtactattaccaactttgcaacagttgatga |
33696421 |
T |
|
| Q |
222 |
aacatcatggattaatgttccatcttctgctccaatatctgttcctccaaatgctatagggatttcagcaggagatgcaagcagctgcacttctagctat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696422 |
aacatcatggattaatgttccatcttctgctccaatatctgttcctccaaatgctatagggatttcagcaggagatgcaagcagctgcacttctagctat |
33696521 |
T |
|
| Q |
322 |
ggaggaggaggaggaccctctccagtatcttattggtctgaannnnnnnnngaggaccccattatgcatgatttatcttaatattcaatttctttgaagt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33696522 |
ggaggaggaggaggaccctctccagtatcttattggtctgaatttttttttgaggaccccattatgcatgatttatcttaatattaaatttctttgaagt |
33696621 |
T |
|
| Q |
422 |
tgaattattgtgtgtgactgtgtgttatgcctctgtcagcttattgnnnnnnncttcccatttgattaaag |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33696622 |
tgaattattgtgtgtgactgtgtgttatgcctctgtcagcttattgtttttttcttcccatttgattaaag |
33696692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University