View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13346_high_11 (Length: 494)
Name: NF13346_high_11
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Complemental strand, 580602 - 580145
Alignment:
| Q |
15 |
atcatcaaaccaagcgcagtttttagcctcaaattttgttaggagggggaattcaagatgaacattgcgccaagatttgggtgagttggtgttaaagtcg |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
580602 |
atcaacaaaccaagcgcagtttttagcctcaaattttgttaggagagggaattcaagatgaacattgcgccaagatttgggtgagtcggtgttaaagttg |
580503 |
T |
|
| Q |
115 |
attccacacaagtttagaattttcaagtttcgaaatagaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaatt |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580502 |
attccacacaagttgagaattttcaagtttcgaaatacaatatatttgctgggagcgggaacatcaacggaattaaaagaatttcgaagcaatttcaatt |
580403 |
T |
|
| Q |
215 |
cttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580402 |
cttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgag |
580303 |
T |
|
| Q |
315 |
aacggagaatgggatttgnnnnnnngaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaaaagaccaattatac |
414 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
580302 |
aacggagaatgggatttgaaaaaaagaatggatttgaagaattttaactctccgcttaaagatgtttgataaccatgaatctagaagagaccaattatac |
580203 |
T |
|
| Q |
415 |
aaagtacagagaaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcg |
472 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580202 |
aaagtaaagaggaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcg |
580145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 1213916 - 1213863
Alignment:
| Q |
258 |
aagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagc |
311 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||| ||||||||||||| |||||| |
|
|
| T |
1213916 |
aagcaattccaattcttctaatagcaaaaagtttttgaaaagagaatcagaagc |
1213863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 1200807 - 1200763
Alignment:
| Q |
21 |
aaaccaagcgcagtttttagcctcaaattttgttaggagggggaa |
65 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1200807 |
aaaccaatcacagtttttggcctcaaattttgttaggagtgggaa |
1200763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 400
Target Start/End: Original strand, 8193030 - 8193171
Alignment:
| Q |
259 |
agcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatggatttgaagaattt |
358 |
Q |
| |
|
||||| |||||||||||||| || | || || || || ||||||| |||||| ||||||||||||| || ||| ||||||||| ||||| ||| |
|
|
| T |
8193030 |
agcaattccaattcttctaataatatgaaatttttaaatagagaatcagaagcaagaacggagaatgagagttgaaactgcgaatggattcgaagatttt |
8193129 |
T |
|
| Q |
359 |
taactctccgcttaaagatgtttgataaccatgaatctagaa |
400 |
Q |
| |
|
||||||| || || |||||||| || |||||| |||||||| |
|
|
| T |
8193130 |
taactctgcggttgaagatgttagagaaccatatatctagaa |
8193171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 8192780 - 8192831
Alignment:
| Q |
14 |
catcatcaaaccaagcgcagtttttagcctcaaattttgttaggagggggaa |
65 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||| || ||||| |
|
|
| T |
8192780 |
catcaacaaaccaagcgcagtttttggtctcaaattttgttagaagtgggaa |
8192831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University