View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_high_12 (Length: 478)
Name: NF13346_high_12
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 461
Target Start/End: Original strand, 17269123 - 17269566
Alignment:
| Q |
9 |
acatcatcattcaaagagcctgggcagacacatgctattttggtatagaatttaatgcagactagagaaagcccccacttgagtttgaacctttaagagc |
108 |
Q |
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|||||| |||| |||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17269123 |
acatcaccattgaaagagcctgggtagatgcatgctattttggtatggaatttaatgcaaactagagaaagcccccacttgagtttgaacctttaagagc |
17269222 |
T |
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| Q |
109 |
tactagtctgcccatgactcctttcctgtaaccgatccttaacattattctcaagtagattcttctaacgcttaagcatcatgagtatccttcagtagta |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
17269223 |
tactagtctgcccatgacccctttcctgtaaccgatccttaacattattctcaagtagattcttctaatgcttaagcatcatgagtatccttcactagta |
17269322 |
T |
|
| Q |
209 |
gtacaaatccaacaccacaataatcagagaatttattgttctgtgtactgtatagtgcatgcttattaattgatacaactcatggacagagacattaata |
308 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
17269323 |
gtacaaatccacaaccacaataaacagagaatttattgttctgtgtactgtatagtgcatgcttattaattgatacaactcat-gacaaggacatgaata |
17269421 |
T |
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| Q |
309 |
tttatagttatatagttatagttctaggtgcatatatttattaactgatacaactcatggatatggaggacagtaatcaatattcaattcagatcaagga |
408 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17269422 |
tt--------tatagttctagttctaggtgcatatatttattaactgatacaactcatgcatatggaggacagtaatcaatattcaattcagatcaagga |
17269513 |
T |
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| Q |
409 |
ctaaaaccctagttctattatgttattgcaagtctcttatcatagtatcatat |
461 |
Q |
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| T |
17269514 |
ctaaagccctagttctattatgttattgcaagtctcttatcatagtatcatat |
17269566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 17268370 - 17268415
Alignment:
| Q |
9 |
acatcatcattcaaagagcctgggcagacacatgctattttggtat |
54 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17268370 |
acatcatcattcaaagagcctgggcagacacatgatattttggtat |
17268415 |
T |
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