View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_high_13 (Length: 460)
Name: NF13346_high_13
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 40718848 - 40719288
Alignment:
| Q |
1 |
agaccaaacttaaccaattgttccaagggacacaaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattggcgggttt |
100 |
Q |
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| T |
40718848 |
agaccaaacttaaccaattgttccaagggacactaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattggcgggttt |
40718947 |
T |
|
| Q |
101 |
tctcaaaaatgaaaataaattggcgggtgcgtggttgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatggcataatttaca |
200 |
Q |
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| T |
40718948 |
tctcaaaaatgaaaataaattggcgggtgcgtggttgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatagcataatttaca |
40719047 |
T |
|
| Q |
201 |
tatnnnnnnnttgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgctttccatttgaccaatacca |
300 |
Q |
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| T |
40719048 |
tataaaaaaattgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgc-ttccatttgaccaatacca |
40719146 |
T |
|
| Q |
301 |
agttggtttcaatgtgtaattacttacgaagtgagaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtacttatgtatttt |
400 |
Q |
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| T |
40719147 |
agttggtttcaatgtgtaattacttacgaagtgaaaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtacttatgtatttt |
40719246 |
T |
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| Q |
401 |
atctgtaagattttcctcaaccgtagttattgagttattagt |
442 |
Q |
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| T |
40719247 |
atctgtaagattttcctcaaccgtagttattgagttattagt |
40719288 |
T |
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