View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_high_16 (Length: 348)
Name: NF13346_high_16
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 7292871 - 7292640
Alignment:
| Q |
10 |
aagaatattcgagttcaaaatctggaaagttccacaagttatctgtgacaaccaaatcaaaaactgaaaatccaatcccaacgcaatcgtaagtttcttt |
109 |
Q |
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| T |
7292871 |
aagaatattcgagttcaaaatctggaaagttccacaagttatctgtgacaaccaaatcaaaaactgaaaatccaattccaacgcaatcgtaagtttcttt |
7292772 |
T |
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| Q |
110 |
ctcaattcttcttttacannnnnnnnnnacgttgctgttcttagactcgatccctatctctgtcnnnnnnnnnnnnnnnnnactgtcattttcgccgatc |
209 |
Q |
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| T |
7292771 |
ctcaattcttgttttaca-tttttttttacgttgctgttcttagactcgatccctatctctgtctttttaatttttatttttctgtcattttcgccgctc |
7292673 |
T |
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| Q |
210 |
gaataatcatacgattttacccatgaattcatg |
242 |
Q |
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| T |
7292672 |
gaataatcatgcgattttacccatgaatgcatg |
7292640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 7292574 - 7292535
Alignment:
| Q |
309 |
gggtttcgtgtatataataataaaaactggtgataaaaac |
348 |
Q |
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| T |
7292574 |
gggtttcgtgtatataataataaaaactgatgataaaaac |
7292535 |
T |
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