View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13346_high_2 (Length: 704)

Name: NF13346_high_2
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13346_high_2
NF13346_high_2
[»] chr4 (79 HSPs)
chr4 (1-685)||(37826576-37827285)
chr4 (57-419)||(48852741-48853100)
chr4 (44-175)||(7790381-7790512)
chr4 (57-177)||(7773467-7773587)
chr4 (45-112)||(48864399-48864466)
chr4 (58-172)||(7237386-7237500)
chr4 (57-175)||(7771696-7771814)
chr4 (44-177)||(45365849-45365982)
chr4 (57-177)||(7765941-7766061)
chr4 (60-112)||(48147358-48147410)
chr4 (44-112)||(49043797-49043865)
chr4 (57-112)||(49038520-49038575)
chr4 (356-419)||(49048516-49048579)
chr4 (44-121)||(45371703-45371780)
chr4 (57-121)||(7908657-7908721)
chr4 (538-669)||(7789892-7790023)
chr4 (357-416)||(45372013-45372072)
chr4 (441-492)||(50669048-50669099)
chr4 (57-127)||(7878732-7878802)
chr4 (67-170)||(48903264-48903364)
chr4 (541-669)||(7771207-7771335)
chr4 (57-177)||(7786763-7786883)
chr4 (565-669)||(45366389-45366493)
chr4 (44-112)||(45384521-45384589)
chr4 (44-112)||(48156058-48156126)
chr4 (57-177)||(48870859-48870979)
chr4 (57-177)||(48876163-48876283)
chr4 (57-177)||(48886545-48886665)
chr4 (41-109)||(50666682-50666750)
chr4 (57-112)||(7813841-7813896)
chr4 (220-419)||(49043994-49044193)
chr4 (538-612)||(7908191-7908265)
chr4 (538-612)||(48902795-48902869)
chr4 (357-417)||(7765701-7765761)
chr4 (441-485)||(7908325-7908369)
chr4 (436-492)||(50250813-50250869)
chr4 (540-612)||(50250936-50251008)
chr4 (448-487)||(7237767-7237806)
chr4 (448-487)||(7771396-7771435)
chr4 (448-487)||(7790081-7790120)
chr4 (57-112)||(7801001-7801056)
chr4 (453-492)||(7813470-7813509)
chr4 (453-492)||(7822959-7822998)
chr4 (538-617)||(45372213-45372292)
chr4 (57-112)||(49048197-49048252)
chr4 (540-659)||(50668862-50668981)
chr4 (441-487)||(7877727-7877773)
chr4 (139-177)||(7878045-7878083)
chr4 (226-308)||(48705193-48705275)
chr4 (66-112)||(50672862-50672908)
chr4 (538-631)||(7237864-7237957)
chr4 (145-257)||(50669301-50669416)
chr4 (357-417)||(7786523-7786583)
chr4 (439-487)||(48705394-48705442)
chr4 (217-257)||(48898959-48898999)
chr4 (538-669)||(7773970-7774101)
chr4 (541-644)||(7904861-7904963)
chr4 (540-615)||(48852517-48852592)
chr4 (360-411)||(48891495-48891546)
chr4 (454-492)||(7765608-7765646)
chr4 (454-492)||(7786430-7786468)
chr4 (538-612)||(7877583-7877657)
chr4 (67-121)||(48861643-48861697)
chr4 (362-419)||(7790140-7790197)
chr4 (457-490)||(7800629-7800662)
chr4 (362-419)||(7908394-7908451)
chr4 (143-244)||(43596153-43596254)
chr4 (357-418)||(45384830-45384891)
chr4 (64-105)||(48734174-48734215)
chr4 (7-112)||(50669446-50669551)
chr4 (367-419)||(7237695-7237747)
chr4 (540-612)||(7765481-7765553)
chr4 (367-419)||(7771455-7771507)
chr4 (540-612)||(7786303-7786375)
chr4 (359-415)||(7877807-7877863)
chr4 (366-418)||(48705330-48705382)
chr4 (62-102)||(48735058-48735098)
chr4 (540-612)||(48870399-48870471)
chr4 (540-612)||(48886085-48886157)
[»] chr8 (14 HSPs)
chr8 (58-259)||(12200559-12200760)
chr8 (58-259)||(12444987-12445188)
chr8 (58-259)||(12195541-12195742)
chr8 (58-259)||(12439969-12440170)
chr8 (60-259)||(4962161-4962367)
chr8 (66-112)||(4031577-4031623)
chr8 (41-259)||(15349100-15349318)
chr8 (443-492)||(12200300-12200349)
chr8 (443-492)||(12444728-12444777)
chr8 (542-612)||(12200161-12200231)
chr8 (542-612)||(12444589-12444659)
chr8 (429-490)||(4031926-4031987)
chr8 (63-120)||(41311005-41311062)
chr8 (540-612)||(15348719-15348791)
[»] chr3 (9 HSPs)
chr3 (58-259)||(11005571-11005766)
chr3 (44-209)||(47451529-47451694)
chr3 (58-324)||(11024146-11024406)
chr3 (58-328)||(11015134-11015398)
chr3 (538-659)||(11015663-11015784)
chr3 (538-617)||(47452051-47452130)
chr3 (366-419)||(11024469-11024522)
chr3 (448-492)||(11005997-11006041)
chr3 (448-492)||(11024572-11024616)
[»] chr5 (6 HSPs)
chr5 (33-110)||(42561951-42562028)
chr5 (57-172)||(9120067-9120182)
chr5 (72-170)||(179364-179462)
chr5 (357-413)||(179112-179168)
chr5 (61-112)||(29688493-29688544)
chr5 (58-112)||(29696600-29696654)
[»] chr7 (6 HSPs)
chr7 (538-615)||(48883652-48883729)
chr7 (57-112)||(48884188-48884243)
chr7 (439-492)||(48883794-48883847)
chr7 (217-259)||(48884047-48884089)
chr7 (59-120)||(30165853-30165914)
chr7 (365-417)||(48883881-48883933)
[»] chr6 (7 HSPs)
chr6 (539-608)||(21015667-21015736)
chr6 (60-112)||(21016185-21016237)
chr6 (448-492)||(21979682-21979726)
chr6 (65-259)||(21979278-21979475)
chr6 (358-415)||(21979577-21979634)
chr6 (69-109)||(14197337-14197377)
chr6 (359-419)||(21015884-21015944)
[»] chr1 (6 HSPs)
chr1 (57-121)||(24367520-24367584)
chr1 (443-488)||(24310168-24310213)
chr1 (57-110)||(24310582-24310635)
chr1 (57-110)||(24416144-24416197)
chr1 (57-107)||(24323139-24323189)
chr1 (540-606)||(24367025-24367091)
[»] scaffold0508 (1 HSPs)
scaffold0508 (575-617)||(12168-12210)


Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 79)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Original strand, 37826576 - 37827285
Alignment:
Q  1 ccactttttgtagaacatagagggtaaaaattgggaatggcatcatcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826576 ccactttttgtagaacatagagggtaaaaattgggaatggcatcatcaatccgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttca 37826675  T
Q  101 tcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaa 200  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826676 tcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaa 37826775  T
Q  201 atcatctgg------aacgggtatctctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaa 294  Q
    |||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826776 atcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaa 37826875  T
Q  295 tgaatggccccatttaagagtgaccctactttggcattataaaagccattcctatatgcggtgtgagtaccctcaatttctctccatgtattatctttca 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37826876 tgaatggccccatttaagagtgaccctactttggcattataaaagccattcctatatgcggtgtgagtaccctcaatttctctccatgaattatctttca 37826975  T
Q  395 aagagaaaaactccaaatgtgatgaccttgttttatcacaagatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagaga 494  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826976 acgagaaaaactccaaatgtgatgaccttgttttatcacaagatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagaga 37827075  T
Q  495 acccaaataatattcttccaaattggagttaaaaggagacaag-------------------cagtggatggattccatatgtagatgtttaaagaacgg 575  Q
    ||| |||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||    
T  37827076 accgaaataatattcttccaaattggagttaaaaggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacgg 37827175  T
Q  576 tgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggaggcgtaaaattgaggttgagtgaatcaggatcatttttaa 675  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37827176 tgcaaaaatacaaaccctctacctgaacctttaatttgaagacgaaaacaaaattcgggaggcgtaaaattgaggttgagtgaatcaggatcatttttaa 37827275  T
Q  676 acgattattc 685  Q
    ||||| ||||    
T  37827276 acgatgattc 37827285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 57 - 419
Target Start/End: Complemental strand, 48853100 - 48852741
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| || ||||| ||        |||||| |||||| ||| ||||||    
T  48853100 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat------cccccatgacccatatacttagaaat 48853007  T
Q  157 tctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaa 256  Q
    |||| ||||||||||||| |  |||| | ||| |||| || ||||||||| || |  |  | |||||| ||||||||||||||||||| |||||| ||||    
T  48853006 tctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaa 48852907  T
Q  257 taa---gatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctactttggcattataaaagccattcctatatgc 353  Q
    |||    || || |||| ||||| ||||| |||  ||||||||||| |||||||| || || ||||||||| ||| || ||   || ||||| | || |     
T  48852906 taacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaggcattcatgtaagg 48852807  T
Q  354 ggtgtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    |  ||||||||||||||||||| |||||| |||| || |||| ||||||||||| |||||||||||    
T  48852806 gaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatga 48852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 7790512 - 7790381
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggccca 143  Q
    ||||||||  || ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||| |    || | || ||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgca 7790413  T
Q  144 tagactaagaaattctccaaatacccacaaac 175  Q
    || ||| |||||||||||||||||||||||||    
T  7790412 taaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 7773467 - 7773587
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||  | |  || | ||||||| ||||||| ||    
T  7773467 aacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatat 7773566  T
Q  157 tctccaaatacccacaaacca 177  Q
    |||||||||||||||||||||    
T  7773567 tctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 48864466 - 48864399
Alignment:
Q  45 atcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatattt 48864399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 7237386 - 7237500
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||  || ||||| ||||| |    ||   ||||||||||| |||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaatt 7237485  T
Q  158 ctccaaatacccaca 172  Q
    |||||||||||||||    
T  7237486 ctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 7771814 - 7771696
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||  || ||||| ||||| |    || | || |||| ||| ||||||    
T  7771814 aacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaat 7771715  T
Q  157 tctccaaatacccacaaac 175  Q
    |||||||||||||||||||    
T  7771714 tctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 45365849 - 45365982
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggccca 143  Q
    |||||||| ||| |||  ||||||| |||||||||||| ||| ||| |||||||||||||||||||||| || ||||| ||||| |    |||| |||||    
T  45365849 catcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagccca 45365948  T
Q  144 tagactaagaaattctccaaatacccacaaacca 177  Q
     | ||| | |||||||||||||||||||||||||    
T  45365949 aaaactgaaaaattctccaaatacccacaaacca 45365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 7766061 - 7765941
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||| || ||||| ||||  | |  || |  |||||| ||| ||||||    
T  7766061 aacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaat 7765962  T
Q  157 tctccaaatacccacaaacca 177  Q
    |||||| ||||||||||||||    
T  7765961 tctccagatacccacaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 48147358 - 48147410
Alignment:
Q  60 aagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatattt 48147410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 49043797 - 49043865
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||  || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  49043797 catcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatattt 49043865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 49038520 - 49038575
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  49038520 aacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatattt 49038575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 49048516 - 49048579
Alignment:
Q  356 tgtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    |||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  49048516 tgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatga 49048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 45371703 - 45371780
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtat 121  Q
    |||| ||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||    
T  45371703 catcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtat 45371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 7908721 - 7908657
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtat 121  Q
    ||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  7908721 aacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtat 7908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 669
Target Start/End: Complemental strand, 7790023 - 7789892
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggagg 637  Q
    |||||||||||||||||| || |||||||  ||  |||| ||||| || |||||||||||| |||||| |||||| || | ||||| ||||||| ||| |    
T  7790023 cagtggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataagattctggaag 7789924  T
Q  638 cgtaaaattgaggttgagtgaatcaggatcat 669  Q
    || |||||| ||||| | |||| |||||||||    
T  7789923 cgaaaaattaaggttcactgaagcaggatcat 7789892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 45372013 - 45372072
Alignment:
Q  357 gtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtga 416  Q
    |||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||    
T  45372013 gtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtga 45372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 50669099 - 50669048
Alignment:
Q  441 tgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  50669099 tgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 50669048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 7878802 - 7878732
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattat 127  Q
    ||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||| || ||||| |||||    
T  7878802 aacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattat 7878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 48903364 - 48903264
Alignment:
Q  67 ttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaata 166  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| || | ||| ||  |||    |||  |||||||| |||||||||||||||||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaa---tccaaagcccataggctaagaaattctccaaata 48903268  T
Q  167 ccca 170  Q
    ||||    
T  48903267 ccca 48903264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 669
Target Start/End: Complemental strand, 7771335 - 7771207
Alignment:
Q  541 tggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggaggcgt 640  Q
    ||||||||||||||| || |||||||  ||  |||| ||||| || |||||||||||| |||||| |||||| || | ||||| ||||||| ||| |||     
T  7771335 tggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctggaagcga 7771236  T
Q  641 aaaattgaggttgagtgaatcaggatcat 669  Q
    |||||| ||||| | |||| |||||||||    
T  7771235 aaaattaaggttcactgaagcaggatcat 7771207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 7786883 - 7786763
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||||||| |||||||  ||||||  ||||||||||||||||||||||||| || ||||| ||||  | |  || |  |||||| ||| ||||||    
T  7786883 aacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaat 7786784  T
Q  157 tctccaaatacccacaaacca 177  Q
    || ||| ||||||||||||||    
T  7786783 tccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 669
Target Start/End: Original strand, 45366389 - 45366493
Alignment:
Q  565 ttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggaggcgtaaaattgaggttgagtgaatcagg 664  Q
    ||||||||| |||||||| || ||| |||||||||||||||||||||||||||  | || ||||||||||| ||  |||||  || ||||||||| |||     
T  45366389 ttaaagaacagtgcaaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcaga 45366488  T
Q  665 atcat 669  Q
    |||||    
T  45366489 atcat 45366493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 45384521 - 45384589
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||| | ||| |||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  45384521 catcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatattt 45384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 48156058 - 48156126
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||| |||  |||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  48156058 catcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatattt 48156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 48870979 - 48870859
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    |||||||||||| ||||||||||| | || ||||||||| ||||||||||| |||| || ||||| || || |    |||| ||  ||||||| ||||||    
T  48870979 aacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaat 48870880  T
Q  157 tctccaaatacccacaaacca 177  Q
    || ||||||||||||||||||    
T  48870879 tccccaaatacccacaaacca 48870859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 48876283 - 48876163
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    |||||||||||| ||||||||||| | || ||||||||| ||||||||||| |||| || ||||| || || |    |||| ||  ||||||| ||||||    
T  48876283 aacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaat 48876184  T
Q  157 tctccaaatacccacaaacca 177  Q
    || ||||||||||||||||||    
T  48876183 tccccaaatacccacaaacca 48876163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 48886665 - 48886545
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    |||||||||||| ||||||||||| | || ||||||||| ||||||||||| |||| || ||||| || || |    |||| ||  ||||||| ||||||    
T  48886665 aacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaat 48886566  T
Q  157 tctccaaatacccacaaacca 177  Q
    || ||||||||||||||||||    
T  48886565 tccccaaatacccacaaacca 48886545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 50666750 - 50666682
Alignment:
Q  41 catcatcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccata 109  Q
    ||||||||||  ||| ||||||||| ||||||||||| ||||||| ||||||||||| |||||||||||    
T  50666750 catcatcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 7813896 - 7813841
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||    
T  7813896 aacaagagttttattccaagacgaatgcactttgtattctttcaacacccatattt 7813841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 419
Target Start/End: Original strand, 49043994 - 49044193
Alignment:
Q  220 tctaacagtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgacc 319  Q
    ||||| ||||||||||| ||||||| |||||||||||||| || || || | ||||| || || |||  ||||| ||||| |||||||| ||||| ||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgacc 49044093  T
Q  320 ctactttggcattataaaagccattcctatatgcggtgtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    ||||  ||| || || | ||   ||  |||| | |  || |||| ||||||||||  ||||| |||||||| |||| |||||||||||||||||| ||||    
T  49044094 ctaccatggaataatcagagaagtttatataagggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgtaatga 49044193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 7908265 - 7908191
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||| |||||||||||||||||||||| |  || ||||| ||||| || ||||||||||||||||||| ||||||    
T  7908265 cagtagatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaattt 7908191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 48902869 - 48902795
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    ||||||| ||||||||||  |||||| | ||||||| |||||||| |||||||||||| ||||||||| ||||||    
T  48902869 cagtggaaggattccataaatagatggtgaaagaacagtgcaaaagtacaaaccctctgcatgaacctataattt 48902795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 7765761 - 7765701
Alignment:
Q  357 gtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgat 417  Q
    |||||||||||| |||||| |||| ||||| ||||| || |||||||||||||||||||||    
T  7765761 gtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaaactccaaatgtgat 7765701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 7908369 - 7908325
Alignment:
Q  441 tgaaacaaccaagtaatcatctctagactggtcataaccaaaacc 485  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  7908369 tgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 50250813 - 50250869
Alignment:
Q  436 gatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||||    
T  50250813 gatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 50250869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 612
Target Start/End: Original strand, 50250936 - 50251008
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||||| ||||| | || || ||| ||| ||||||| ||| ||||||||||||||||||||||    
T  50250936 gtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaattt 50251008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 487
Target Start/End: Original strand, 7237767 - 7237806
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccat 487  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7237767 accaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 487
Target Start/End: Complemental strand, 7771435 - 7771396
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccat 487  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7771435 accaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 487
Target Start/End: Complemental strand, 7790120 - 7790081
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccat 487  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7790120 accaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 7801056 - 7801001
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||| |||||||||||    
T  7801056 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatattt 7801001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 7813509 - 7813470
Alignment:
Q  453 gtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7813509 gtaatcatctcttgactggtcataaccaaaaccatataga 7813470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 7822998 - 7822959
Alignment:
Q  453 gtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7822998 gtaatcatctcttgactggtcataaccaaaaccatataga 7822959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 538 - 617
Target Start/End: Original strand, 45372213 - 45372292
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaaga 617  Q
    ||||||||||||||||||  |||| | || ||  ||  |||||||||| |||||||||||||||||||||||||| ||||    
T  45372213 cagtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaacctttaatttcaaga 45372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 49048197 - 49048252
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||| |||||||||||| |||||||||| ||| || |||||||||||||||||||    
T  49048197 aacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatattt 49048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 659
Target Start/End: Complemental strand, 50668981 - 50668862
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggaggcg 639  Q
    |||||||||||||||||| |||||||  ||||||  |||||||||| ||| |||||||| |||||| |||| | | ||  |||| ||||||  ||| | |    
T  50668981 gtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagattgaggaagtg 50668882  T
Q  640 taaaattgaggttgagtgaa 659  Q
     |||||| ||||||||||||    
T  50668881 aaaaattaaggttgagtgaa 50668862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 7877773 - 7877727
Alignment:
Q  441 tgaaacaaccaagtaatcatctctagactggtcataaccaaaaccat 487  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||    
T  7877773 tgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 7878083 - 7878045
Alignment:
Q  139 gcccatagactaagaaattctccaaatacccacaaacca 177  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7878083 gcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 48705193 - 48705275
Alignment:
Q  226 agtttcctttccattaaattaaaggcaacaataagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatt 308  Q
    |||| |||||||||||||| |||||||||||||| || |  | || ||||| |||||||||  ||||||||||| ||||||||    
T  48705193 agttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 50672908 - 50672862
Alignment:
Q  66 cttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatattt 50672862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 631
Target Start/End: Original strand, 7237864 - 7237957
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattc 631  Q
    |||||||||||||||||| ||||||||||  ||   ||| ||||| || ||||||||||||||||||| | |||| || | ||||| |||||||    
T  7237864 cagtggatggattccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacaggaaaataagattc 7237957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 50669416 - 50669301
Alignment:
Q  145 agactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgg---gtatctctaacagtttcctttccatta 241  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||  | || |  ||||||||| ||||  |   | || |||||||||||||||||||| |    
T  50669416 agactgagaaattctccaaatacccacaaaccacaatctgaagtttgatggataaaatcatccggaagagtaggcatgtctaacagtttcctttccatca 50669317  T
Q  242 aattaaaggcaacaat 257  Q
    ||| ||||||||||||    
T  50669316 aatcaaaggcaacaat 50669301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 7786583 - 7786523
Alignment:
Q  357 gtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgat 417  Q
    |||||||||||| |||||| |||| ||||| ||||| || ||||||| |||||||||||||    
T  7786583 gtgagtaccctcgatttctttccaagtattgtctttaaacgagaaaacctccaaatgtgat 7786523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 487
Target Start/End: Original strand, 48705394 - 48705442
Alignment:
Q  439 attgaaacaaccaagtaatcatctctagactggtcataaccaaaaccat 487  Q
    |||||||||||||||||||||||| | ||||| ||||| ||||||||||    
T  48705394 attgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 48898999 - 48898959
Alignment:
Q  217 atctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  48898999 atctctaacagtttcctttccgttaaatcaaaggcaacaat 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 669
Target Start/End: Original strand, 7773970 - 7774101
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggagg 637  Q
    |||||||||||||||||||||||||||||     ||| | ||||| || |||||||||||| |||||| |||||| |    ||||| ||||||| ||| |    
T  7773970 cagtggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttcagccggaaaataagattctggaag 7774069  T
Q  638 cgtaaaattgaggttgagtgaatcaggatcat 669  Q
    || |||||| ||||| | |||| ||| |||||    
T  7774070 cgaaaaattaaggttcactgaagcagtatcat 7774101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 644
Target Start/End: Complemental strand, 7904963 - 7904861
Alignment:
Q  541 tggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggaggcgt 640  Q
    ||||||||||||||||| |||||||| ||   |||| ||||| || |||||||||||| |||||| |||||| ||   ||||| ||||||||||| |||     
T  7904963 tggatggattccatatg-agatgtttgaacggcggtacaaaagtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcga 7904865  T
Q  641 aaaa 644  Q
    ||||    
T  7904864 aaaa 7904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 615
Target Start/End: Complemental strand, 48852592 - 48852517
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaa 615  Q
    ||||||||||||||||  || || | | |||||||||||||||||| ||| |||||||||||| | ||||| ||||    
T  48852592 gtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaagcattaatatgaa 48852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 48891546 - 48891495
Alignment:
Q  360 agtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaa 411  Q
    |||||||||||||||| ||||  |||||||| |||| |||||||||||||||    
T  48891546 agtaccctcaatttctttccacatattatctctcaatgagaaaaactccaaa 48891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 7765646 - 7765608
Alignment:
Q  454 taatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  7765646 taatcatctctagactgatcgtaaccaaaaccatataga 7765608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 7786468 - 7786430
Alignment:
Q  454 taatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  7786468 taatcatctctagactgatcgtaaccaaaaccatataga 7786430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 7877657 - 7877583
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||||||||||||||| ||  |  || || ||||| || ||||||||| ||||||||| ||||||    
T  7877657 cagtggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaattt 7877583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 48861697 - 48861643
Alignment:
Q  67 ttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtat 121  Q
    |||||||||||| |||||| |||||||||||| || |||||||||| || |||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtat 48861643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 7790197 - 7790140
Alignment:
Q  362 taccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    |||| ||||||||| |||| ||||||||| | || ||||||| |||||||||||||||    
T  7790197 taccatcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatga 7790140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 490
Target Start/End: Complemental strand, 7800662 - 7800629
Alignment:
Q  457 tcatctctagactggtcataaccaaaaccatata 490  Q
    |||||||| |||||||||||||||||||||||||    
T  7800662 tcatctcttgactggtcataaccaaaaccatata 7800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 7908451 - 7908394
Alignment:
Q  362 taccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    |||||||||||||| |||||||||||||| | |  |||||||||| |||||||| |||    
T  7908451 taccctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttga 7908394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #67
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 43596153 - 43596254
Alignment:
Q  143 atagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaa 242  Q
    |||||||||||||||| ||||||||||||| | || ||| |  |||||||| || |||| |||| ||||   | |||||||| ||||| ||||| |||||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatcgggaaaaagcatctctaagagtttgctttcaattaa 43596252  T
Q  243 at 244  Q
    ||    
T  43596253 at 43596254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #68
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 45384830 - 45384891
Alignment:
Q  357 gtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatg 418  Q
    ||||| ||||| ||||||| |||||| |||| || |||| |||||||||||||| |||||||    
T  45384830 gtgagcaccctgaatttctttccatgcattagctctcaacgagaaaaactccaagtgtgatg 45384891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #69
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 48734215 - 48734174
Alignment:
Q  64 gtcttagtccaagacgaatgcagtttgtattctttcatcacc 105  Q
    ||||| |||||| ||||||||| |||||||||||||||||||    
T  48734215 gtctttgtccaatacgaatgcactttgtattctttcatcacc 48734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #70
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 50669551 - 50669446
Alignment:
Q  7 tttgtagaacatagagggtaaaaattgggaatggcatcatcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 106  Q
    |||||||| |||| |||| |||| || |||||| |  |||||||  | | || |||||||||||||||||| |||||||  ||| | |||||||||||||    
T  50669551 tttgtagagcatataggggaaaatttaggaatgactgcatcaatctgtagaataagagtcttagtccaagatgaatgcaacttggaatctttcatcaccc 50669452  T
Q  107 atattt 112  Q
    | ||||    
T  50669451 acattt 50669446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #71
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 7237695 - 7237747
Alignment:
Q  367 tcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    ||||||||| ||||  |||||||| | |||||||||| |||||||||||||||    
T  7237695 tcaatttctttccacatattatctctaaaagagaaaacctccaaatgtgatga 7237747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #72
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 7765553 - 7765481
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||| ||||| ||||||  |  ||||| || ||||| ||| ||||||||||| ||||||||||    
T  7765553 gtggatggattccaaatgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaattt 7765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #73
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 7771507 - 7771455
Alignment:
Q  367 tcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    ||||||||| |||| ||||||||| | || ||||||| |||||||||||||||    
T  7771507 tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgatga 7771455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #74
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 7786375 - 7786303
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||||||||| ||||||  |  ||| | || ||||| ||| ||||||||||| ||||||||||    
T  7786375 gtggatggattccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaattt 7786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #75
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 7877863 - 7877807
Alignment:
Q  359 gagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtg 415  Q
    |||||| |||| ||||| |||||||||||||| | || |||||||||| ||||||||    
T  7877863 gagtactctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtg 7877807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #76
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 48705330 - 48705382
Alignment:
Q  366 ctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatg 418  Q
    |||||||||| ||||||||||| || |||| ||||||||||| || |||||||    
T  48705330 ctcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgatg 48705382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #77
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 48735058 - 48735098
Alignment:
Q  62 gagtcttagtccaagacgaatgcagtttgtattctttcatc 102  Q
    |||| |||||||||||||||| || ||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #78
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 48870471 - 48870399
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||||| ||||| | ||  || ||  ||||| |||| ||| ||||||||||||||||||||||    
T  48870471 gtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaattt 48870399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #79
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 48886157 - 48886085
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||||| ||||| | ||  || ||  ||||| |||| ||| ||||||||||||||||||||||    
T  48886157 gtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaattt 48886085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 12200760 - 12200559
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    ||||||||||| |||||||||||| |||||||||||  ||||||| ||||||||| ||| || ||||||| |     |||   |||||||||||||||||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12200661  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    |||||||||||||||||||| ||||   | || ||| ||  |||||||||||||   ||||||||| || ||||||||||||||||| ||||||||||||    
T  12200660 ctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12200561  T
Q  258 aa 259  Q
    ||    
T  12200560 aa 12200559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 12445188 - 12444987
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    ||||||||||| |||||||||||| |||||||||||  ||||||| ||||||||| ||| || ||||||| |     |||   |||||||||||||||||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12445089  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    |||||||||||||||||||| ||||   | || ||| ||  |||||||||||||   ||||||||| || ||||||||||||||||| ||||||||||||    
T  12445088 ctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12444989  T
Q  258 aa 259  Q
    ||    
T  12444988 aa 12444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 12195742 - 12195541
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    |||||||||||||||||||| || ||  ||||||||||||||||| ||||||||| || |||  |||||| |     |||   ||||||||| |||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaatt 12195643  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
     ||||||||||||||||||| |||     ||| ||| ||   ||||||||||||  ||||||||||||| ||||||||||||||||| |||| |||||||    
T  12195642 ttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12195543  T
Q  258 aa 259  Q
    ||    
T  12195542 aa 12195541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 12440170 - 12439969
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    |||||||||||||||||||| || ||  ||||||||||||||||| ||||||||| || |||  |||||| |     |||   ||||||||| |||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaatt 12440071  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
     ||||||||||||||||||| |||     ||| ||| ||   ||||||||||||  ||||||||||||| ||||||||||||||||| |||| |||||||    
T  12440070 ttccaaatacccacaaaccataatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12439971  T
Q  258 aa 259  Q
    ||    
T  12439970 aa 12439969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 4962161 - 4962367
Alignment:
Q  60 aagagtcttagtccaagacg---aatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||||||| || | ||  |||   |    ||||| |||||||||| ||||||    
T  4962161 aagagtcttagtccacgacgacgaatgcagtttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaat 4962260  T
Q  157 tctccaaatacccacaaaccaaaa--tatgg--aggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggca 252  Q
    ||||||||||||||||||||| ||  ||  |  ||| |||| || ||||||||  ||||  || |||||||||| ||||||||||||||||| |||| ||    
T  4962261 tctccaaatacccacaaaccataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaagaca 4962360  T
Q  253 acaataa 259  Q
    | |||||    
T  4962361 ataataa 4962367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 4031577 - 4031623
Alignment:
Q  66 cttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatattt 4031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 15349318 - 15349100
Alignment:
Q  41 catcatcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggc 140  Q
    |||||||||||  || ||||||| |||| |||||||| || | || |||||||||||||||||||||||||| ||   ||| ||||  |    || | |     
T  15349318 catcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtaga 15349219  T
Q  141 ccatagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccatt 240  Q
    ||| ||||||| |||||| ||||| |||||||||||| |||    || |||||  | |||||||||||||   || ||||| ||||||||||||||  ||    
T  15349218 ccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgttt 15349119  T
Q  241 aaattaaaggcaacaataa 259  Q
    |||| ||| ||||||||||    
T  15349118 aaatcaaatgcaacaataa 15349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 12200349 - 12200300
Alignment:
Q  443 aaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  12200349 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12200300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 12444777 - 12444728
Alignment:
Q  443 aaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  12444777 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 12444728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 612
Target Start/End: Complemental strand, 12200231 - 12200161
Alignment:
Q  542 ggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||| |||||| |||    ||| |||||| |||| ||||||||| ||||||||||||||||    
T  12200231 ggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaattt 12200161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 612
Target Start/End: Complemental strand, 12444659 - 12444589
Alignment:
Q  542 ggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    |||||||||||||| |||||| |||    ||| |||||| |||| ||||||||| ||||||||||||||||    
T  12444659 ggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaattt 12444589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 4031926 - 4031987
Alignment:
Q  429 atcacaagatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatata 490  Q
    ||||||||| |||||||| |||| ||| |||| | | ||||||||||| |||||||||||||    
T  4031926 atcacaagacattgaaaccaccaggtagtcatttgttgactggtcatacccaaaaccatata 4031987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 41311005 - 41311062
Alignment:
Q  63 agtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgta 120  Q
    ||||||||||||||| ||||| | |  |||||||| |||||||||||| |||||||||    
T  41311005 agtcttagtccaagatgaatgtattgcgtattcttgcatcacccatatcttaagtgta 41311062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 612
Target Start/End: Complemental strand, 15348791 - 15348719
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaattt 612  Q
    ||||||||||||||||  |||| | || || ||  || ||||| |||||| ||||||||||||||||||||||    
T  15348791 gtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaattt 15348719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 11005571 - 11005766
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| || ||| | ||        ||||| |||||||||||||||||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcc------cccatagcccatagactaagaaatt 11005664  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    ||||||||| ||||||| || ||| |  ||| ||||  | |||| ||| |||||  || |||||||| ||||||||||||| ||||| |||| |||||||    
T  11005665 ctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaat 11005764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 47451529 - 47451694
Alignment:
Q  44 catcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggccca 143  Q
    |||||||| ||| ||||||||||||   |||||||||||  | |||||||||||||||||||||||||| || | ||| ||||| ||   |||   |||     
T  47451529 catcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaaccct 47451628  T
Q  144 tagactaagaaattctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctgg 209  Q
    |||||||||||||||||||||||||||||||||| |||  | ||| |||| || ||||||||||||    
T  47451629 tagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctgg 47451694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 324
Target Start/End: Original strand, 11024146 - 11024406
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||     |||  ||  ||||| ||||||||||| |||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattg-----tta-caccccccatagcccatagactgagaaatt 11024239  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    ||||||||| ||||||| || |||    ||| ||||  | |||| |||||||||  || ||||| || |||| |||||||| ||||| |||||||| |||    
T  11024240 ctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaatcaaaggcaataat 11024339  T
Q  258 aagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctact 324  Q
    || || || || | |||||   ||| |||  |||||||||||   |||||| ||||||| |||||||    
T  11024340 aacatccattgataaatcattgcgaaaagagaaccaatgaatattcccattaaagagtgtccctact 11024406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 58 - 328
Target Start/End: Original strand, 11015134 - 11015398
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaatt 157  Q
    |||||||| |||  |||||||||||||| ||||||||||||||| |||||||||| || |||   ||  |      |||| ||||||||||| |||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct------ccatagcccatagacttagaaatt 11015227  T
Q  158 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaat 257  Q
    ||||||||| ||||||| || ||| |  ||| |||| || |||| |||||||||   | ||||| || ||||||||||||| ||||| |||| |||||||    
T  11015228 ctccaaatatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaat 11015327  T
Q  258 aagatgcagtggtgaatcacgacgataagttaaccaatgaatggccccatttaagagtgaccctactttgg 328  Q
    || || || || | ||||| | ||| |||  ||||||||||| | |||||| |||||   |||||||||||    
T  11015328 aacatccattgataaatcatggcgaaaagagaaccaatgaatagtcccattaaagagcatccctactttgg 11015398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 538 - 659
Target Start/End: Original strand, 11015663 - 11015784
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaagacgaaaacaagattcgggagg 637  Q
    |||| ||||||||||||| |||||||||| ||||||    ||||| || ||| ||||||||||||| |||||||| ||||| | || ||||||| |||||    
T  11015663 cagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaagactagaataagattctggagg 11015762  T
Q  638 cgtaaaattgaggttgagtgaa 659  Q
    | ||||||| ||||| ||||||    
T  11015763 cataaaattaaggttcagtgaa 11015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 617
Target Start/End: Original strand, 47452051 - 47452130
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaaga 617  Q
    ||||||||||||||||||||||||||||| ||||||     |||| || |||||||||||||||||||||||||| ||||    
T  47452051 cagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaaga 47452130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 11024469 - 11024522
Alignment:
Q  366 ctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    |||||||||  ||||||||||| || ||||||||||||||| ||||||||||||    
T  11024469 ctcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatga 11024522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 11005997 - 11006041
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||||||||| || |||||||| |||||||||||||||    
T  11005997 accaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 11024572 - 11024616
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||||||||| || |||||||| |||||||||||||||    
T  11024572 accaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 42561951 - 42562028
Alignment:
Q  33 gggaatggcatcatcaatacgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatat 110  Q
    ||||||| |||||| |||| ||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  42561951 gggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 9120182 - 9120067
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaat 156  Q
    ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||| || ||||| ||||  |    |||| ||||||| ||| ||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaat 9120083  T
Q  157 tctccaaatacccaca 172  Q
    ||||||||||||||||    
T  9120082 tctccaaatacccaca 9120067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 179462 - 179364
Alignment:
Q  72 ccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaataccca 170  Q
    |||||| ||||||| |||||||||||||||||||||||||| || ||||| ||||| |    |||| ||||||| ||| ||||||| ||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 179168 - 179112
Alignment:
Q  357 gtgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatg 413  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  179168 gtgaataccctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 29688544 - 29688493
Alignment:
Q  61 agagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||| ||||||||||| ||||  ||||||| |||||||||||||||||    
T  29688544 agagtctttgtccaagacgattgcacattgtattttttcatcacccatattt 29688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 29696654 - 29696600
Alignment:
Q  58 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||||||||||||||| || ||||  ||||||| || ||||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 538 - 615
Target Start/End: Complemental strand, 48883729 - 48883652
Alignment:
Q  538 cagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctttaatttgaa 615  Q
    ||||| |||||||||||||| |||||||  ||||||  |||||||| | |||||||||||| ||||||||||||||||    
T  48883729 cagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaacctttaatttgaa 48883652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 48884243 - 48884188
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  48884243 aacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatattt 48884188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 48883847 - 48883794
Alignment:
Q  439 attgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    |||||||| |||| |||||||||||| ||| |||||||||||||||||||||||    
T  48883847 attgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatataga 48883794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 48884089 - 48884047
Alignment:
Q  217 atctctaacagtttcctttccattaaattaaaggcaacaataa 259  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||    
T  48884089 atctctaacagtttcttttccattaaatcaaaggcagcaataa 48884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 30165914 - 30165853
Alignment:
Q  59 caagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgta 120  Q
    |||||||| |||||||||| ||||||| |  |||||||| |||||||||||| |||| ||||    
T  30165914 caagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 30165853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 48883933 - 48883881
Alignment:
Q  365 cctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgat 417  Q
    ||||||||||| ||||  |||||||| |||| |||||| ||||||||||||||    
T  48883933 cctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgat 48883881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 608
Target Start/End: Complemental strand, 21015736 - 21015667
Alignment:
Q  539 agtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaaccttta 608  Q
    ||||||||||||||||| |||||||||| ||  | |||||||||||| ||||||||||||||||| ||||    
T  21015736 agtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaacattta 21015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 21016237 - 21016185
Alignment:
Q  60 aagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattt 112  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatattt 21016185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 21979682 - 21979726
Alignment:
Q  448 accaagtaatcatctctagactggtcataaccaaaaccatataga 492  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||    
T  21979682 accaagtaatcatttcttgactggtcataaccaaaaccatataga 21979726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 259
Target Start/End: Original strand, 21979278 - 21979475
Alignment:
Q  65 tcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtatgatt---ataactgcccatggcccatagactaagaaattctcc 161  Q
    ||||| ||||||| ||| ||| |||||||||||||||||||||||||||   |||||||||   |||| |   |||  || ||||||||||||| |||||    
T  21979278 tcttattccaagaggaacgcactttgtattctttcatcacccatatttttgatgtatgatttccataa-tcgacat--ccaatagactaagaaaatctcc 21979374  T
Q  162 aaatacccacaaaccaaaatatggaggatcatcgtgaaaatc---atctggaacgggtatctctaacagtttcctttccattaaattaaaggcaacaata 258  Q
    |||||||||||||  |  || || |   | || |||||||||   ||||||||  || ||||| || ||||||||||| ||||||| |||||||||||||    
T  21979375 aaatacccacaaatgacgatgtgaaaactgatagtgaaaatcatgatctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaata 21979474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 21979577 - 21979634
Alignment:
Q  358 tgagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtg 415  Q
    |||| ||||||||||| | |||| ||||||||| |||||||||||| |||||||||||    
T  21979577 tgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaatgtg 21979634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  69 agtccaagacgaatgcagtttgtattctttcatcacccata 109  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 21015944 - 21015884
Alignment:
Q  359 gagtaccctcaatttctctccatgtattatctttcaaagagaaaaactccaaatgtgatga 419  Q
    ||||||||||||||||| ||||  |||||||| |||| ||||||||||| || ||||||||    
T  21015944 gagtaccctcaatttctttccacctattatctctcaacgagaaaaactctaactgtgatga 21015884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 24367584 - 24367520
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatattttaagtgtat 121  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| | ||||||||    
T  24367584 aacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaagtgtat 24367520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 24310213 - 24310168
Alignment:
Q  443 aaacaaccaagtaatcatctctagactggtcataaccaaaaccata 488  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||    
T  24310213 aaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 24310635 - 24310582
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatat 110  Q
    ||||||||| ||| ||||||| || |||| ||||||||||||||||||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 24416197 - 24416144
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccatat 110  Q
    ||||||||| ||||||||||| || |||  ||||||||||||||||||||||||    
T  24416197 aacaagagttttagtccaagatgactgccctttgtattctttcatcacccatat 24416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 24323189 - 24323139
Alignment:
Q  57 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccca 107  Q
    ||||||||| |||||| |||| || |||| |||||||||||||||||||||    
T  24323189 aacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 606
Target Start/End: Complemental strand, 24367091 - 24367025
Alignment:
Q  540 gtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacatgaacctt 606  Q
    |||||||| ||||||| ||| |||||| |||||  |||||| |||| |||||||| |||||||||||    
T  24367091 gtggatgggttccataggtaaatgtttgaagaagagtgcaacaatataaaccctcgacatgaacctt 24367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 617
Target Start/End: Complemental strand, 12210 - 12168
Alignment:
Q  575 gtgcaaaaatacaaaccctctacatgaacctttaatttgaaga 617  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  12210 gtgcaaaaatataaaccttctacatgaacctttaatttgaaga 12168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University