View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_high_3 (Length: 700)
Name: NF13346_high_3
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 19 - 687
Target Start/End: Original strand, 42215196 - 42215864
Alignment:
| Q |
19 |
ttaatcagttgtcaggtattataccacctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttc |
118 |
Q |
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| T |
42215196 |
ttaatcagttgtcaggtattataccacctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttc |
42215295 |
T |
|
| Q |
119 |
tgttattggcaacttgagaagcttgactctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcag |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215296 |
tgttattggcaacttgagaaacttgactctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcag |
42215395 |
T |
|
| Q |
219 |
gcacttgatctttcatacaacaacctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215396 |
gcacttgatctttcatacaacaacctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttgg |
42215495 |
T |
|
| Q |
319 |
aaggattaataccacctgatataggtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215496 |
aaggattaataccacctgatataggtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaa |
42215595 |
T |
|
| Q |
419 |
cttgaagaacttgaattttttggacttgcactacaatcatcttgtaggggagattccatctcagttctctggtcttagcaaacttggagtgcttgatctc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215596 |
cttgaagaacttgaattttttggacttgcactacaatcatcttgtaggggagattccatctcagttctctggtcttagcaaacttggagtgcttgatctc |
42215695 |
T |
|
| Q |
519 |
tcccacaacaagctctcagggaatttagatgctctttctaaccttcataatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgccta |
618 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215696 |
tcccacaacaagctctcagggaatttagatgctatttctaaccttcataatcttgtttctttaaatgtttccttcaatgaattctctggtgaattgccta |
42215795 |
T |
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| Q |
619 |
actcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattcctgatg |
687 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215796 |
actcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattcctgatg |
42215864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 30 - 354
Target Start/End: Original strand, 24156628 - 24156952
Alignment:
| Q |
30 |
tcaggtattataccacctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggca |
129 |
Q |
| |
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|||||||| ||||| ||||| |||||| | |||| |||||||| ||| || ||| |||||||||||||| | ||||||||||||||| || ||||||||| |
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| T |
24156628 |
tcaggtatcatacctcctgagatttcacattgcacttctttgactcaacttgaaattgacaacaatgctctcactggtgagattcctcctcttattggca |
24156727 |
T |
|
| Q |
130 |
acttgagaagcttgactctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatct |
229 |
Q |
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| ||||||| ||||| | | |||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| | |||||| |||||||||| |
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| T |
24156728 |
atttgagaaacttgaatttgttctttgcatggcagaacaagttaacaggaaaaatcccagatagtctttcagattgtcaagaacttcagtcacttgatct |
24156827 |
T |
|
| Q |
230 |
ttcatacaacaacctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaata |
329 |
Q |
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||||||||| || | | |||| | ||||||||| ||| ||| ||||||||||| || | ||| |||||||||||||||||||| ||| || ||| |
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| T |
24156828 |
ttcatacaataatttgattggtccaataccaaaaacactttttaatttgaggaatctcacaaaacttttgcttatttccaatgatttgtcaggctttata |
24156927 |
T |
|
| Q |
330 |
ccacctgatataggtaactgcacaa |
354 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
24156928 |
ccacctgatataggaaactgcacaa |
24156952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 471 - 680
Target Start/End: Original strand, 24157426 - 24157635
Alignment:
| Q |
471 |
attccatctcagttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatc |
570 |
Q |
| |
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|||||||| || |||||| ||||||||||||| | |||||||||||||| || ||||| |||||||||||||||||| |||| ||| ||||||| |||| |
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| T |
24157426 |
attccatcacaattctctagtcttagcaaactaagtgtgcttgatctctcacataacaaactctcagggaatttagatcctctatctgaccttcaaaatc |
24157525 |
T |
|
| Q |
571 |
ttgtttctttaaatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaagg |
670 |
Q |
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||||||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||| || |||||| |||||||||| | | |||| |||| |
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| T |
24157526 |
ttgtttccttaaatgtttccttcaatgccttctctggtaagttacctaacacaccattcttccataatctccctctcagtgatcttgccgaaaatgaagg |
24157625 |
T |
|
| Q |
671 |
tcttcacatt |
680 |
Q |
| |
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|||| ||||| |
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|
| T |
24157626 |
tctttacatt |
24157635 |
T |
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