View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_high_4 (Length: 673)
Name: NF13346_high_4
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 13 - 653
Target Start/End: Complemental strand, 48877925 - 48877291
Alignment:
| Q |
13 |
aatatgtgaaatgttgtagcctcacaaccacaaccagatttggcaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
112 |
Q |
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| T |
48877925 |
aatatgtgaaatgttgtagccccacaaccgcaaccagatttgacaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
48877826 |
T |
|
| Q |
113 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877825 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
48877726 |
T |
|
| Q |
213 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877725 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
48877626 |
T |
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| Q |
313 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtcccattcccat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48877625 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtc------ccat |
48877532 |
T |
|
| Q |
413 |
aagctaactagggaggctacatatatggctaatccttaagtgtcaattctctaactatgaaacttaattactaccaaaaacttatctgcaatattcctaa |
512 |
Q |
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| T |
48877531 |
aagctaactagggaggctacatatatggctaatcctcaagtgtctattctctaactatgaaacttaattactaccaaaaacttatctgcaatattcctaa |
48877432 |
T |
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| Q |
513 |
acagctccaagtctctaatccggacagcatttgtaagttcaaagtaaggcctcaacactgtctccatttcgtattgcataaagacagttccagttccggt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48877431 |
acagctccaagtctctaatccggacagcatttgtaagttcaaagtaaggcctcaacactgtctccatttcgtattgcataaagacaattccagttccggt |
48877332 |
T |
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| Q |
613 |
atttctgccaaccgcaaacacactatgatagtctacttgtt |
653 |
Q |
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| T |
48877331 |
atttctgccaaccgcaaacacactatgatagtctacttgtt |
48877291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 33016227 - 33016147
Alignment:
| Q |
235 |
caagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattctttt |
315 |
Q |
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| T |
33016227 |
caagctatcaagtgaacatcagagttgaggttgaataatgttatttttgagttaggtgcgaaaataatggtagattttttt |
33016147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 53454373 - 53454423
Alignment:
| Q |
490 |
aaacttatctgcaatattcctaaacagctccaagtctctaatccggacagc |
540 |
Q |
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| T |
53454373 |
aaacttatctgcaatgttcctaaacagctccaaatctccaatacggacagc |
53454423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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