View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13346_high_6 (Length: 659)

Name: NF13346_high_6
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13346_high_6
NF13346_high_6
[»] chr4 (19 HSPs)
chr4 (65-540)||(55561174-55561672)
chr4 (581-642)||(55561713-55561774)
chr4 (65-151)||(36215730-36215827)
chr4 (103-153)||(14251275-14251325)
chr4 (103-153)||(51399295-51399345)
chr4 (103-149)||(24039333-24039379)
chr4 (103-153)||(29430143-29430193)
chr4 (103-153)||(44304061-44304111)
chr4 (103-153)||(48018689-48018739)
chr4 (99-153)||(49905807-49905861)
chr4 (104-153)||(8607855-8607904)
chr4 (99-151)||(43099404-43099456)
chr4 (103-153)||(1113289-1113339)
chr4 (103-153)||(17728733-17728783)
chr4 (103-153)||(35016769-35016819)
chr4 (103-153)||(44304220-44304270)
chr4 (103-153)||(55620272-55620322)
chr4 (103-153)||(55627576-55627626)
chr4 (99-143)||(51024536-51024580)
[»] chr7 (15 HSPs)
chr7 (99-153)||(24485769-24485823)
chr7 (103-153)||(24485648-24485698)
chr7 (103-153)||(24846450-24846500)
chr7 (103-153)||(472804-472854)
chr7 (103-153)||(6000558-6000608)
chr7 (103-149)||(8462930-8462976)
chr7 (103-153)||(26041586-26041636)
chr7 (103-153)||(472677-472727)
chr7 (103-153)||(4133075-4133125)
chr7 (103-153)||(6000685-6000735)
chr7 (103-153)||(18417454-18417504)
chr7 (103-153)||(30284154-30284204)
chr7 (99-153)||(32389676-32389730)
chr7 (103-153)||(37691774-37691824)
chr7 (103-153)||(37691933-37691983)
[»] chr8 (10 HSPs)
chr8 (103-153)||(21015170-21015220)
chr8 (103-153)||(10134687-10134737)
chr8 (103-153)||(10134846-10134896)
chr8 (99-153)||(31933352-31933406)
chr8 (103-153)||(36194706-36194756)
chr8 (103-153)||(40832215-40832265)
chr8 (103-152)||(40832344-40832393)
chr8 (103-151)||(12654782-12654830)
chr8 (103-153)||(18847445-18847495)
chr8 (103-153)||(21015011-21015061)
[»] chr5 (10 HSPs)
chr5 (103-153)||(8417797-8417847)
chr5 (103-153)||(14662600-14662650)
chr5 (103-153)||(35463801-35463851)
chr5 (99-153)||(9990157-9990211)
chr5 (103-152)||(1983487-1983536)
chr5 (103-144)||(18508612-18508653)
chr5 (103-151)||(14662443-14662491)
chr5 (103-153)||(9990034-9990084)
chr5 (103-149)||(36207414-36207460)
chr5 (103-151)||(18508760-18508808)
[»] chr3 (16 HSPs)
chr3 (99-153)||(4953203-4953257)
chr3 (103-151)||(52857057-52857105)
chr3 (103-153)||(11047216-11047266)
chr3 (103-153)||(13301885-13301935)
chr3 (103-153)||(13312541-13312591)
chr3 (103-153)||(24244544-24244594)
chr3 (103-153)||(26246947-26246997)
chr3 (99-150)||(26247104-26247155)
chr3 (103-153)||(24244702-24244752)
chr3 (103-153)||(26988884-26988934)
chr3 (103-153)||(28253522-28253572)
chr3 (103-153)||(31071152-31071202)
chr3 (99-153)||(46452954-46453008)
chr3 (103-153)||(46453112-46453162)
chr3 (103-153)||(49220320-49220370)
chr3 (103-153)||(52857214-52857264)
[»] chr2 (10 HSPs)
chr2 (103-153)||(12702006-12702056)
chr2 (103-153)||(10373253-10373303)
chr2 (103-153)||(16203523-16203573)
chr2 (103-153)||(16581416-16581466)
chr2 (103-153)||(36065293-36065343)
chr2 (103-153)||(36065452-36065502)
chr2 (103-153)||(38978853-38978903)
chr2 (103-154)||(12261062-12261113)
chr2 (103-153)||(16203681-16203731)
chr2 (103-153)||(25946064-25946114)
[»] chr1 (20 HSPs)
chr1 (103-153)||(10394209-10394259)
chr1 (103-153)||(39277820-39277870)
chr1 (103-153)||(45823025-45823075)
chr1 (99-143)||(5682975-5683019)
chr1 (102-153)||(47422098-47422149)
chr1 (103-153)||(7714251-7714301)
chr1 (103-153)||(10719562-10719612)
chr1 (103-153)||(15158402-15158452)
chr1 (103-153)||(27334424-27334474)
chr1 (103-153)||(39277661-39277711)
chr1 (98-154)||(35814166-35814222)
chr1 (103-153)||(10394368-10394418)
chr1 (103-153)||(28990378-28990428)
chr1 (103-153)||(28990536-28990586)
chr1 (103-153)||(30049994-30050044)
chr1 (99-153)||(35814321-35814375)
chr1 (103-153)||(52285290-52285340)
chr1 (103-152)||(10719436-10719485)
chr1 (105-153)||(15158530-15158578)
chr1 (103-151)||(52285134-52285182)
[»] scaffold0220 (2 HSPs)
scaffold0220 (103-153)||(26042-26092)
scaffold0220 (103-153)||(26201-26251)
[»] chr6 (4 HSPs)
chr6 (99-149)||(1211477-1211527)
chr6 (99-153)||(1211629-1211683)
chr6 (99-153)||(959088-959142)
chr6 (99-153)||(959242-959296)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-153)||(233672-233720)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 65 - 540
Target Start/End: Original strand, 55561174 - 55561672
Alignment:
Q  65 aactgatttaattagtattagtttggtatctaaa----------ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaagggag 154  Q
    |||| ||||||||||||||| |||||||||||||          ||| ||||||||||||| ||| ||  ||||| |||||||||||||| ||||||||     
T  55561174 aactaatttaattagtattaatttggtatctaaacttaattttttttaaattaaattaataaaaaagataaaaccgatactttaaataaagttaagggac 55561273  T
Q  155 ttta---gacattttatacttataggatcaaaacgataagggaccaactgaacat---------aattaaaa-gtcccactcaaaacaaatcaaactact 241  Q
     | |   || ||||||||||| |||| |||||  |||||||||||||  ||||||         |||||||| |||||||||||||||||||||||||||    
T  55561274 ctaaacagatattttatacttgtagggtcaaattgataagggaccaatcgaacatttaagccataattaaaaagtcccactcaaaacaaatcaaactact 55561373  T
Q  242 agtaaaacctgaattttcaattgaagtaaacgatttcttaaaataaaataaaaattgaagtaaacgatgcaaagcatgatataaaactgagaaactcgtc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  55561374 agtaaaacctgaattttcaattgaagtaaacgatttcttaaaataaaataaaaattgaagcaaacgatgcaaagcatgatataaaaccgagaaactcgtc 55561473  T
Q  342 ccacttggttgcgtaaaaaggaacaaaacttaaataaacaaacacactcaactcaagatttaatagtgagtttcttgcgttactatactgaaactgagat 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  55561474 ccacttggttgcgtaaaaaggaacaaaacttaaataaacaaacacactcaactcaagatttaacagtcagtttcttgcgttactatactgaaaccgagat 55561573  T
Q  442 tcattccaaaaagatgaaagcagtttccgattggatccattcttcttcaaatgagcacattgaaacgtaccagcaatggttcatcttagccgattcagg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55561574 tcattccaaaaagatgaaagcagtttccgattggatccattcttcttcaaatgagcacattgaaacgtaccagcaatggttcatcttagccgattcagg 55561672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 581 - 642
Target Start/End: Original strand, 55561713 - 55561774
Alignment:
Q  581 cacacattgtaaaaccaattcatcactatttattttcggttttcattgattgatggtagatg 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55561713 cacacattgtaaaaccaattcatcactatttattttcggttttcattgattgatggtagatg 55561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 36215827 - 36215730
Alignment:
Q  65 aactgatttaattagtattagtttggtatctaaa-----------ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    |||| |||||||||||||||||||||||||||||           ||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  36215827 aacttatttaattagtattagtttggtatctaaacttaacgtttttttgaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 36215730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 14251325 - 14251275
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  14251325 aattaaattaatagaaaggatcaaaccgatactttaaataaagttaaggga 14251275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 51399345 - 51399295
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  51399345 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 51399295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 24039379 - 24039333
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaa 149  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||    
T  24039379 aattaaattaatagaaaagatcaaaccgatactttaaataaaattaa 24039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 29430143 - 29430193
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||||||||    
T  29430143 aattaaattaacagaaaggaccgaactgatactttaaataaaattaaggga 29430193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 44304111 - 44304061
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  44304111 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 44304061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 48018739 - 48018689
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||||| || |||| | |||||||||||||||||||||||    
T  48018739 aattaaattaatagaaatgatcaaatcgatactttaaataaaattaaggga 48018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 49905861 - 49905807
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| ||||| || |||||| |||||||||||||| ||||||||    
T  49905861 ttttaattaaattaacagaaatgatcaaaccgatactttaaataaagttaaggga 49905807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 8607904 - 8607855
Alignment:
Q  104 attaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  8607904 attaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 8607855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 43099456 - 43099404
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    |||||||||||| |||||||| ||||||| | |||||||||||||| ||||||    
T  43099456 ttttaattaaatcaatagaaatgaccaaaacgatactttaaataaagttaagg 43099404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 1113339 - 1113289
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| ||||||||  |||||||||||||| ||||||||    
T  1113339 aattaaattaacagaaacgaccaaactgatactttaaataaagttaaggga 1113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 17728783 - 17728733
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||| |||||||| ||||||||  |||| ||||||||||||||||||    
T  17728783 aattaaataaatagaaatgaccaaactgataccttaaataaaattaaggga 17728733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 35016819 - 35016769
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||  |||||||||||||| ||||||| |||||| ||||||||    
T  35016819 aattaaattaaccgaaaggaccaaaccgatactttcaataaagttaaggga 35016769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 44304220 - 44304270
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | |||||| |||||| |||||||||||||| ||||||||    
T  44304220 aattaaattaacataaaggatcaaaccgatactttaaataaagttaaggga 44304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 55620322 - 55620272
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  ||||||| |||||| ||||||||    
T  55620322 aattaaattaacagaaaggaccaaactgatacttttaataaagttaaggga 55620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 55627626 - 55627576
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  ||||||| |||||| ||||||||    
T  55627626 aattaaattaacagaaaggaccaaactgatacttttaataaagttaaggga 55627576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 51024580 - 51024536
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataa 143  Q
    ||||||||||||||| ||||||||| ||||  |||||||||||||    
T  51024580 ttttaattaaattaacagaaaggactaaactgatactttaaataa 51024536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 24485769 - 24485823
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  24485769 ttttaattaaattaatagaaaggaccaaaccgacactttaaataaagttaaggga 24485823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 24485698 - 24485648
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  24485698 aattaaattaatagaagggaccaaaccattactttaaataaagttaaggga 24485648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 24846450 - 24846500
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  24846450 aattaaattaacagaaaggaccaaaccaatactttcaataaagttaaggga 24846500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 472804 - 472854
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  472804 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 472854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 6000608 - 6000558
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  6000608 aattaaattaacagaaaggaccaaactgatactttaaataaagttaaggga 6000558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 8462976 - 8462930
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaa 149  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  8462976 aattaaattaacagaaaggatcaaaccaatactttaaataaagttaa 8462930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 26041636 - 26041586
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  26041636 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 26041586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 472727 - 472677
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  ||||||| |||||| ||||||||    
T  472727 aattaaattaacagaaaggaccaaactgatactttcaataaagttaaggga 472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 4133075 - 4133125
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  | |||||||||||| ||||||||    
T  4133075 aattaaattaacagaaaggaccaaactgacactttaaataaagttaaggga 4133125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 6000685 - 6000735
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||||| |||  |||||||||||||| ||||||||    
T  6000685 aattaaattaagagaaaggacctaacggatactttaaataaagttaaggga 6000735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 18417454 - 18417504
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||| ||||||||||||   |||||||||||||| ||||||||    
T  18417454 aattaaattaatggaaaggaccaaattgatactttaaataaagttaaggga 18417504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 30284154 - 30284204
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||| ||||||||    
T  30284154 aattaaattaacagaaatgaccaaaccgatactttcaataaagttaaggga 30284204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 32389676 - 32389730
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| | |||||| |||||  |||||||||||||| ||||||||    
T  32389676 ttttaattaaattaacaaaaaggatcaaactgatactttaaataaagttaaggga 32389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 37691824 - 37691774
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| |||||||   |||||||||||||||||||||||    
T  37691824 aattaaattaacagaaaagaccaaagtgatactttaaataaaattaaggga 37691774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 37691933 - 37691983
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||  |||||||||||||  |||||||||||||| ||||||||    
T  37691933 aattaaattaactgaaaggaccaaactgatactttaaataaagttaaggga 37691983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 21015170 - 21015220
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  21015170 aattaaattaaaagaaaggaccaaaccgatactttaaataaagttaaggga 21015220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 10134737 - 10134687
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  10134737 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 10134687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10134846 - 10134896
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  10134846 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 10134896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 31933406 - 31933352
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| |||||||||||||   |||||||||||||| ||||||||    
T  31933406 ttttaattaaattaacagaaaggaccaaagtgatactttaaataaagttaaggga 31933352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 36194756 - 36194706
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||||||||||| |||||  |||||||||||||| ||||||||    
T  36194756 aattaaattaatagaaaggatcaaactgatactttaaataaagttaaggga 36194706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 40832265 - 40832215
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | |||||| |||||| |||||||||||||||||||||||    
T  40832265 aattaaattaacataaaggatcaaaccgatactttaaataaaattaaggga 40832215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 40832344 - 40832393
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggg 152  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| |||||||    
T  40832344 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaaggg 40832393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 12654830 - 12654782
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    ||||||||||| ||||||||||||||  |||||||||||||| ||||||    
T  12654830 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagg 12654782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 18847495 - 18847445
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | || |||||||||| |||||||||||||| ||||||||    
T  18847495 aattaaattaacataagggaccaaaccgatactttaaataaagttaaggga 18847445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 21015061 - 21015011
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||| ||||||||||  ||||||||||||| ||||||||    
T  21015061 aattaaattaacagaagggaccaaaccgttactttaaataaagttaaggga 21015011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 8417797 - 8417847
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  8417797 aattaaattaactgaaaggaccaaactaatactttaaataaaattaaggga 8417847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 14662600 - 14662650
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  14662600 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 14662650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 35463801 - 35463851
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  35463801 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 35463851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 9990157 - 9990211
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| | |||||||||| || |||||||||||||| ||||||||    
T  9990157 ttttaattaaattaacataaaggaccaatccgatactttaaataaagttaaggga 9990211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 1983487 - 1983536
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggg 152  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| |||||||    
T  1983487 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaaggg 1983536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 18508653 - 18508612
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaa 144  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  18508653 aattaaattaacagaaaggaccaaaccaatactttcaataaa 18508612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 14662491 - 14662443
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    |||||||||||||||| ||||||||||  ||||||||||||| ||||||    
T  14662491 aattaaattaatagaagggaccaaaccgttactttaaataaagttaagg 14662443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 9990084 - 9990034
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||| ||| |||||| |||||||||||||| ||||||||    
T  9990084 aattaaattaacagaagggatcaaaccgatactttaaataaagttaaggga 9990034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 36207414 - 36207460
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaa 149  Q
    |||||||||||  |||||||| ||||| |||||||||||||||||||    
T  36207414 aattaaattaaccgaaaggactaaaccgatactttaaataaaattaa 36207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 18508760 - 18508808
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    ||||||||||| ||||| || |||||| |||||||||||||| ||||||    
T  18508760 aattaaattaacagaaaagatcaaaccgatactttaaataaagttaagg 18508808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 4953257 - 4953203
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||    
T  4953257 ttttaattaaattaacagaagggaccaaaccattactttaaataaagttaaggga 4953203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 52857105 - 52857057
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  52857105 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagg 52857057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11047216 - 11047266
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||||    
T  11047216 aattaaattaacagaaatgaccaaactaatactttaaataaagttaaggga 11047266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 13301885 - 13301935
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  13301885 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 13301935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 13312541 - 13312591
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  13312541 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 13312591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 24244594 - 24244544
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||| ||||||||||||| ||||||| |||||| ||||||||    
T  24244594 aattaaattaatataaaggaccaaaccgatactttcaataaagttaaggga 24244544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 26246997 - 26246947
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  26246997 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 26246947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 26247104 - 26247155
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaag 150  Q
    ||||||||||||||| ||||||||||||||  ||||||| |||||| |||||    
T  26247104 ttttaattaaattaacagaaaggaccaaactgatactttcaataaagttaag 26247155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 24244702 - 24244752
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| || |||||| |||||||||||||| ||||||||    
T  24244702 aattaaattaacagaaatgatcaaaccgatactttaaataaagttaaggga 24244752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 26988934 - 26988884
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||  ||| |||||||||| |||||||||||||| ||||||||    
T  26988934 aattaaattaactgaagggaccaaacccatactttaaataaagttaaggga 26988884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 28253572 - 28253522
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||| |||||||||| |||||| ||||||| ||||||||    
T  28253572 aattaaattaacagaagggaccaaaccgatacttgaaataaagttaaggga 28253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 31071152 - 31071202
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| ||||||||  |||||||||||||| ||||||||    
T  31071152 aattaaattaacagaaatgaccaaactgatactttaaataaagttaaggga 31071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 46453008 - 46452954
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| |||| |||||||||   ||||||||||||| ||||||||    
T  46453008 ttttaattaaattaacagaagggaccaaactgttactttaaataaagttaaggga 46452954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 46453112 - 46453162
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | ||||||| ||||| |||||||||||||| ||||||||    
T  46453112 aattaaattaacataaaggactaaaccgatactttaaataaagttaaggga 46453162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 49220320 - 49220370
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||||||| |  |||||||||||||| ||||||||    
T  49220320 aattaaattaacagaaaggaccaagctgatactttaaataaagttaaggga 49220370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 52857214 - 52857264
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||| ||||||||||  ||||||||||||| ||||||||    
T  52857214 aattaaattaacagaagggaccaaaccgttactttaaataaagttaaggga 52857264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 12702056 - 12702006
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  12702056 aattaaattaacagaaaggaccaaaccaatactttaaatgaagttaaggga 12702006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10373253 - 10373303
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  10373253 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 10373303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 16203573 - 16203523
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||||| || |||||| |||||||||||||| ||||||||    
T  16203573 aattaaattaatagaaatgatcaaaccgatactttaaataaagttaaggga 16203523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 16581466 - 16581416
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  16581466 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 16581416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 36065343 - 36065293
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  36065343 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 36065293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 36065452 - 36065502
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  36065452 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 36065502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 38978853 - 38978903
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  38978853 aattaaattaacagaaaggaccaaactgatactttaaataaagttaaggga 38978903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 12261062 - 12261113
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagggag 154  Q
    ||||||||||| |||||||||||| || | |||||||||||| |||||||||    
T  12261062 aattaaattaaaagaaaggaccaagccgacactttaaataaagttaagggag 12261113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 16203681 - 16203731
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| ||||||| |||||| ||||||||    
T  16203681 aattaaattaacagaaaggatcaaaccgatactttcaataaagttaaggga 16203731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 25946064 - 25946114
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||  ||||||||||||||||||||||  ||||| ||||||||    
T  25946064 aattaaattaaccgaaaggaccaaaccaatactttctataaagttaaggga 25946114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 10394259 - 10394209
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  10394259 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 10394209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 39277820 - 39277870
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  39277820 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 39277870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 45823025 - 45823075
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  45823025 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 45823075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 5683019 - 5682975
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataa 143  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  5683019 ttttaattaaattaatagaaaggaccaaaacgatactttaaataa 5682975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 47422098 - 47422149
Alignment:
Q  102 taattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||| ||||| ||||||||| |||||||||||||| ||||||||    
T  47422098 taattaaattaacagaaatgaccaaaccgatactttaaataaagttaaggga 47422149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 7714301 - 7714251
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  7714301 aattaaattaacagaaaggaccaaactgatactttaaataaagttaaggga 7714251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10719562 - 10719612
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  10719562 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 10719612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 15158452 - 15158402
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||||||| |||||||||| |||||| ||||||| ||||||||    
T  15158452 aattaaattaatagaacggaccaaaccgatacttgaaataaatttaaggga 15158402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 27334474 - 27334424
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||||    
T  27334474 aattaaattaacagaagggaccaaaccattactttaaataaagttaaggga 27334424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 39277711 - 39277661
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  39277711 aattaaattaacagaaaggaccaaactgatactttaaataaagttaaggga 39277661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 35814222 - 35814166
Alignment:
Q  98 attttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaagggag 154  Q
    |||| ||||||||||||||||||||||||||| | ||||| | |||| |||||||||    
T  35814222 atttgaattaaattaatagaaaggaccaaaccgacactttcactaaagttaagggag 35814166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 10394368 - 10394418
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | || |||||||||| |||||||||||||| ||||||||    
T  10394368 aattaaattaacaaaagggaccaaaccgatactttaaataaagttaaggga 10394418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 28990428 - 28990378
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| | ||||||||| ||| |||||||||||||| ||||||||    
T  28990428 aattaaattaacaaaaaggaccagaccgatactttaaataaagttaaggga 28990378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 28990536 - 28990586
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||  ||||||||||| || ||||||||    
T  28990536 aattaaattaacagaaaggaccaaactgatactttaaatgaagttaaggga 28990586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 30050044 - 30049994
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| ||||||||  |||||||||||||| ||||||||    
T  30050044 aattaaattaacagaaaagaccaaactgatactttaaataaagttaaggga 30049994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 35814321 - 35814375
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||  |||||||| |||||  |||||||||||||| ||||||||    
T  35814321 ttttaattaaattatcagaaaggatcaaactgatactttaaataaagttaaggga 35814375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 52285290 - 52285340
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||| ||||||||  |||||||||||||| ||||||||    
T  52285290 aattaaattaacagaaatgaccaaacggatactttaaataaagttaaggga 52285340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 10719485 - 10719436
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggg 152  Q
    ||||||||||| | ||||||||||||| ||||||| |||||| |||||||    
T  10719485 aattaaattaacaaaaaggaccaaaccgatacttttaataaagttaaggg 10719436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 15158530 - 15158578
Alignment:
Q  105 ttaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||| |||||||||||||  ||| ||||||||||| ||||||||    
T  15158530 ttaaattaacagaaaggaccaaattaatgctttaaataaagttaaggga 15158578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 52285182 - 52285134
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaagg 151  Q
    ||||||||||| |||||||| |||||  |||||||||||||| ||||||    
T  52285182 aattaaattaacagaaaggatcaaactgatactttaaataaagttaagg 52285134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 26092 - 26042
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  26092 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaaggga 26042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 26201 - 26251
Alignment:
Q  103 aattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||    
T  26201 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaaggga 26251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 1211527 - 1211477
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaa 149  Q
    ||||||||||||||| | || |||||||||| |||||||||||||||||||    
T  1211527 ttttaattaaattaacaaaagggaccaaaccgatactttaaataaaattaa 1211477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 1211629 - 1211683
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| | || |||||| |||||||||||||||||| ||||||||    
T  1211629 ttttaattaaattaacaaaatggaccataccaatactttaaataaagttaaggga 1211683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 959142 - 959088
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||| || |||||||| |||||| ||||||| |||||| ||||||||    
T  959142 ttttaattaaatcaagagaaaggatcaaaccgatactttcaataaagttaaggga 959088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 959242 - 959296
Alignment:
Q  99 ttttaattaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    ||||||||||||||| ||||||||  ||||  |||||||||||||| ||||||||    
T  959242 ttttaattaaattaacagaaaggattaaactgatactttaaataaagttaaggga 959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 233672 - 233720
Alignment:
Q  105 ttaaattaatagaaaggaccaaaccaatactttaaataaaattaaggga 153  Q
    |||||||||||||||  |||||||  |||||||||||||| ||||||||    
T  233672 ttaaattaatagaaaaaaccaaactgatactttaaataaagttaaggga 233720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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