View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13346_low_1 (Length: 1033)

Name: NF13346_low_1
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13346_low_1
NF13346_low_1
[»] chr7 (2 HSPs)
chr7 (16-1014)||(1477104-1478102)
chr7 (44-98)||(24498292-24498346)
[»] chr6 (5 HSPs)
chr6 (357-1014)||(19178768-19179425)
chr6 (16-312)||(19179426-19179722)
chr6 (521-567)||(2535326-2535372)
chr6 (527-565)||(11686400-11686438)
chr6 (519-557)||(2535467-2535505)
[»] chr2 (2 HSPs)
chr2 (367-519)||(37220855-37221002)
chr2 (273-366)||(37221061-37221154)
[»] chr3 (1 HSPs)
chr3 (604-686)||(46460941-46461023)
[»] chr8 (2 HSPs)
chr8 (281-367)||(27261725-27261811)
chr8 (314-359)||(32447519-32447564)
[»] scaffold0021 (1 HSPs)
scaffold0021 (521-567)||(113396-113442)
[»] chr5 (1 HSPs)
chr5 (521-567)||(22917811-22917857)
[»] chr4 (1 HSPs)
chr4 (48-98)||(4368582-4368632)


Alignment Details
Target: chr7 (Bit Score: 926; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 16 - 1014
Target Start/End: Complemental strand, 1478102 - 1477104
Alignment:
Q  16 atgaacatctaaaacacagttgagaaggatttttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagtagattagcatattatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1478102 atgaacatctaaaacacagttgagaaggatttttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagtagattagcatattatcaa 1478003  T
Q  116 aacacatattaatccacaagaaaaatgatgagaccatagagtaaggtaaaatcattcatctaaggacataattccttttttaataacgtataattgataa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1478002 aacacatattaatccacaagaaaaatgatgagaccatagagtaaggtaaaatcattcatctaaggacataattccttttttaataacgtataattgataa 1477903  T
Q  216 atacttaacttttcactaaaaaagcaaattctttaacagtccattaatacataattgaaaaaagaaaattctttaacaatccattgatacataattttat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  1477902 atacttaacttttcactaaaaaagcaaattctttaacagtccattaatacataattgaaaaaagcaatttctttaacaatccattgatacataattttat 1477803  T
Q  316 gatacattaatctaatagaatcttttgagaatgccttcaccaccaaataaaagagagcaaacatattttctgaatcattacaagatttttctgtgtcatg 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  1477802 gatacattaatctaatagaatcttttgaaaatgccttcaccaccaaataaaagagagcaaacatattttctgaatcattgcaagatttttctatgtcatg 1477703  T
Q  416 attttttgaaacttcaaataagagagcaagaatattatatgtatcaaatgacctcaccatacaataaaatttacaaccaaacagtatcagcatcaataat 515  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1477702 attttttgaaacttcaaataagagagcaagaatattctatgtatcaaatgacctcaccatacaataaaatttacaaccaaacagtatcagcatcaataat 1477603  T
Q  516 cttcggtgaaacacaaaattaaggcacaaaactaattccaaatcaaattaaacataaccctaatgaaatccaacaataatttcactatctaaagcaatat 615  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1477602 cttcagtgaaacacaaaattaaggcacaaaactaattccaaatcaaattaaacataaccctaatgaaatccaacaataatttcactatctaaagcaatat 1477503  T
Q  616 attctccattatccaatagcaacatcagagtaaagttagtaagaaaggacttaaaatttaccagttatgagg-aaaaaatttaggatcacttataccata 714  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  1477502 attctccattatccaatagcaacaacagagtaaagttagtaagaaaggacttaaaatttac--gttatgaggaaaaaaatttaggatcacttataccata 1477405  T
Q  715 acatccaagcataataacttctattcacccaaacatgcataattagtttcaaaatcacttatgtagtaacttaatttcataactcaaccacttttcccta 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  1477404 acatccaagcataataacttctattcacccaaacatgcataattagtttcaaaatcatttatgtagtaacttaatttcataactcaaccacttttccctg 1477305  T
Q  815 ataattcctt-aaggttcaaatcaaagttttcatttcattattctctaatcacataacttctaaaaattcaaagcttactaaaaactcacctcagataac 913  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1477304 ataattccttaaaggttcaaatcaaagttttcatttcattattctctaaccacataacttctaaaaattcaaagcttactaaaaactcacctcagataac 1477205  T
Q  914 ttccaattgttgtcacaagctcttaacaccacttctctattcaaaccctaacttcaatctttctcaagagagggaaaagatagagaatccaagctctcca 1013  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1477204 ttccaattgttgtcacaagctcttaacaccacttctctatccaaaccctaacttcaatctttctcaagagagggaaaagatagagaatccaagctctcca 1477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 24498346 - 24498292
Alignment:
Q  44 atttttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagta 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24498346 attttggtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagta 24498292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 597; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 357 - 1014
Target Start/End: Complemental strand, 19179425 - 19178768
Alignment:
Q  357 accaaataaaagagagcaaacatattttctgaatcattacaagatttttctgtgtcatgattttttgaaacttcaaataagagagcaagaatattatatg 456  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19179425 accaaataaaagagagcaaacatattttctgaatcattgcaagatttttctatgtcatgattttttgaaacttcaaataagagagcaagaatattctatg 19179326  T
Q  457 tatcaaatgacctcaccatacaataaaatttacaaccaaacagtatcagcatcaataatcttcggtgaaacacaaaattaaggcacaaaactaattccaa 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19179325 tatcaaatgacctcaccatacaataaaatttacaaccaaacagtatcagcatcaataatcttcagtgaaacacaaaattaaggcacaaaactaattccaa 19179226  T
Q  557 atcaaattaaacataaccctaatgaaatccaacaataatttcactatctaaagcaatatattctccattatccaatagcaacatcagagtaaagttagta 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19179225 atcaaattaaacataaccctaatgaaatccaacaataatttcactatctaaagcaatatattctccattatccaatagcaacaacagagtaaagttagta 19179126  T
Q  657 agaaaggacttaaaatttaccagttatgagg-aaaaaatttaggatcacttataccataacatccaagcataataacttctattcacccaaacatgcata 755  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19179125 agaaaggacttaaaatttac--gttatgaggaaaaaaatttaggatcacttataccataacatccaagcataataacttctattcacccaaacatgcata 19179028  T
Q  756 attagtttcaaaatcacttatgtagtaacttaatttcataactcaaccacttttccctaataattcctt-aaggttcaaatcaaagttttcatttcatta 854  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  19179027 attagtttcaaaatcatttatgtagtaacttaatttcataactcaaccacttttccctgataattccttaaaggttcaaatcaaagttttcatttcatta 19178928  T
Q  855 ttctctaatcacataacttctaaaaattcaaagcttactaaaaactcacctcagataacttccaattgttgtcacaagctcttaacaccacttctctatt 954  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19178927 ttctctaaccacataacttctaaaaattcaaagcttactaaaaactcacctcagataacttccaattgttgtcacaagctcttaacaccacttctctatc 19178828  T
Q  955 caaaccctaacttcaatctttctcaagagagggaaaagatagagaatccaagctctccat 1014  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19178827 caaaccctaacttcaatctttctcaagagagggaaaagatagagaatccaagctctccat 19178768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-161
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 19179722 - 19179426
Alignment:
Q  16 atgaacatctaaaacacagttgagaaggatttttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagtagattagcatattatcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19179722 atgaacatctaaaacacagttgagaaggatttttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagtagattagcatattatcaa 19179623  T
Q  116 aacacatattaatccacaagaaaaatgatgagaccatagagtaaggtaaaatcattcatctaaggacataattccttttttaataacgtataattgataa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19179622 aacacatattaatccacaagaaaaatgatgagaccatagagtaaggtaaaatcattcatctaaggacataattccttttttaataacgtataattgataa 19179523  T
Q  216 atacttaacttttcactaaaaaagcaaattctttaacagtccattaatacataattgaaaaaagaaaattctttaacaatccattgatacataattt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  19179522 atacttaacttttcactaaaaaagcaaattctttaacagtccattaatacataattgaaaaaagcaatttctttaacaatccattgatacataattt 19179426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 521 - 567
Target Start/End: Original strand, 2535326 - 2535372
Alignment:
Q  521 gtgaaacacaaaattaaggcacaaaactaattccaaatcaaattaaa 567  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2535326 gtgaaacacaaaattagggcacaaaactaattccaaatcaaattaaa 2535372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 527 - 565
Target Start/End: Original strand, 11686400 - 11686438
Alignment:
Q  527 cacaaaattaaggcacaaaactaattccaaatcaaatta 565  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  11686400 cacaaaattagggcacaaaactaattccaaatcaaatta 11686438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 2535467 - 2535505
Alignment:
Q  519 cggtgaaacacaaaattaaggcacaaaactaattccaaa 557  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  2535467 cggtgaaacacaaaattagggcacaaaactaatcccaaa 2535505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 367 - 519
Target Start/End: Complemental strand, 37221002 - 37220855
Alignment:
Q  367 agagagcaaacatattttctgaatcattacaagatttttctgtgtcatgattttttgaaacttcaaataagagagcaagaatattatatgtatcaaatga 466  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||   |||||||||| |||||||| ||| ||||||||||  |||||||||||||    
T  37221002 agagagcaaacatattttctgaatcattgcaagatttttctgtgccat---tttttgaaacatcaaataacagaccaagaatattcaatgtatcaaatga 37220906  T
Q  467 cctcaccatacaataaaatttacaaccaaacagtatcagcatcaataatcttc 519  Q
    |||||||||||||||||| || |||  ||||||||||||||||||||||||||    
T  37220905 cctcaccatacaataaaactttcaa--aaacagtatcagcatcaataatcttc 37220855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 37221154 - 37221061
Alignment:
Q  273 aaaaaagaaaattctttaacaatccattgatacataattttatgatacattaatctaatagaatcttttgagaatgccttcaccaccaaataaa 366  Q
    ||||||||| ||||||| ||||||||||||| |||||| |||| || ||| ||| | |||| |||||||| |||| |||||| |||||||||||    
T  37221154 aaaaaagaagattctttgacaatccattgattcataatcttatcatgcatcaatgttataggatcttttgggaataccttcagcaccaaataaa 37221061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 604 - 686
Target Start/End: Complemental strand, 46461023 - 46460941
Alignment:
Q  604 ctaaagcaatatattctccattatccaatagcaacatcagagtaaagttagtaagaaaggacttaaaatttaccagttatgag 686  Q
    |||||||||||||||||||||| | | |||| |||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  46461023 ctaaagcaatatattctccattcttcgatagaaacaacagagaaaagtcagtaagaaaggacataaaatttaccagttatgag 46460941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 27261725 - 27261811
Alignment:
Q  281 aaattctttaacaatccattgatacataattttatgatacattaatctaatagaatcttttgagaatgccttcaccaccaaataaaa 367  Q
    ||||||||||||||||||   || ||||||   ||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||    
T  27261725 aaattctttaacaatccaaatatgcataatccaatgatacattaatctaatacaatcttttgagaataccttcaacaccaaaaaaaa 27261811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 32447519 - 32447564
Alignment:
Q  314 atgatacattaatctaatagaatcttttgagaatgccttcaccacc 359  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||    
T  32447519 atgatacattaatctaatacaatcttttgagaataccttcaacacc 32447564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 521 - 567
Target Start/End: Complemental strand, 113442 - 113396
Alignment:
Q  521 gtgaaacacaaaattaaggcacaaaactaattccaaatcaaattaaa 567  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  113442 gtgaaacacaaaattagggcacaaaactaattcaaaatcaaattaaa 113396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 521 - 567
Target Start/End: Complemental strand, 22917857 - 22917811
Alignment:
Q  521 gtgaaacacaaaattaaggcacaaaactaattccaaatcaaattaaa 567  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  22917857 gtgaaacacaaaattagggcacaaaactaattcaaaatcaaattaaa 22917811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 4368632 - 4368582
Alignment:
Q  48 ttgtgacaggaaatgaatgctgtgaaagattggcatactatggtatgagta 98  Q
    |||| |||||||||||||| |||||||||||||| |||||||| |||||||    
T  4368632 ttgtaacaggaaatgaatgttgtgaaagattggcttactatggcatgagta 4368582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University