View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_10 (Length: 525)
Name: NF13346_low_10
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_10 |
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| [»] scaffold1953 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 19708419 - 19708917
Alignment:
| Q |
11 |
catcatcaaagcaaaaacctgaatggagaaaaagttgannnnnnnnnnnnngctagttgaataattgcttgaggaaaatccaatcatccaatttcaaaag |
110 |
Q |
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| T |
19708419 |
catcattaaagcaaaaacctgaatggagaaaaagttgatttttttttttt-gctagttgaataattgcttgaggaaaatccaatcatccaatttcaaaag |
19708517 |
T |
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| Q |
111 |
aggaaggaggggaagcaaaaataaaatgtttaaacagagaatgaattccattaaaccgaagttgatggcgtagtaaaaaatgtacaggtaaaagttgaca |
210 |
Q |
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| T |
19708518 |
aggaaggaggggaagcaaaaataaaatgtttaaacagagaatgaattccattaaaccgaagttgatggcgtagtaaaaaatgtacaggtaaaagttgaca |
19708617 |
T |
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| Q |
211 |
atttttcttttcctgtagatatgacagtaatggagatgacagattaccaagagtgtcccttgctattagggagatcattccttgcaactgctcaagcact |
310 |
Q |
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| T |
19708618 |
atttttcttttcctgtagatatgacagtaatggagatgacagattaccaagagtgtcccttgctattagggagatcattccttgcaactgctcaagcact |
19708717 |
T |
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| Q |
311 |
catagatgtgcagaagttgaagatcatgatcagatcaaagggtgattctcagacctataatgttgacggcaacatagaacgagaaacatcctaagaggtg |
410 |
Q |
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| T |
19708718 |
catagatgtgcagaagttgaagatcgtgatcagatcaaagggtgattctcagacctataatgttgacggcaacatagaacgagaaacatcctaagaggtg |
19708817 |
T |
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| Q |
411 |
tgcaaaagggcaagagtaaggtattcacatccaactacaaaactcaaaagg-ccaaatcacccaaccaaatgagccatatgagaaaattggtgataatac |
509 |
Q |
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| T |
19708818 |
tgcaaaagggcaagagtaaggtattcacatccaactacaaaactcaaaaggcccaaatcacccaaccaaatgagccatatgagaaaattggtgataatac |
19708917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 194 - 375
Target Start/End: Complemental strand, 16166308 - 16166127
Alignment:
| Q |
194 |
acaggtaaaagttgacaatttttcttttcctgtagatatgacagtaatggagatgacagattaccaagagtgtcccttgctattagggagatcattcctt |
293 |
Q |
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| T |
16166308 |
acaggtaaaagtagacaaattttcttttcctacagatatgatagttatgaagatgataaattaccaagagtgtcccctgctattggggagatcattgctt |
16166209 |
T |
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| Q |
294 |
gcaactgctcaagcactcatagatgtgcagaagttgaagatcatgatcagatcaaagggtgattctcagacctataatgttg |
375 |
Q |
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| T |
16166208 |
acaacttctcaagcactcatatatgtggagagaggaaagattgtgatcagatcaaatgatgattgttagacctatattgttg |
16166127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1953 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1953
Description:
Target: scaffold1953; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 361
Target Start/End: Original strand, 806 - 1004
Alignment:
| Q |
163 |
aaaccgaagttgatggcgtagtaaaaaatgtacaggtaaaagttgacaatttttcttttcctgtagatatgacagtaatggagatgacagattaccaaga |
262 |
Q |
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||||| |||| ||||| |||| ||| ||||| || ||||||||||||| | ||||||||| | |||||| || | | ||||||| |||||||||| |
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| T |
806 |
aaaccaaagtagatgggatagtcaaagatgtaaagttaaaagttgacaaatcatcttttcctacatatatgattgttgtagtgatgacaaattaccaaga |
905 |
T |
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| Q |
263 |
gtgtcccttgctattagggagatcattccttgcaactgctcaagcactcatagatgtgcagaagttgaagatcatgatcagatcaaagggtgattctca |
361 |
Q |
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| T |
906 |
gtgtaccttgctatcggggatatcattccttgcaacttctcaggcaataatagatgtgcaaaatgggaggatcatgatcagatcaaatggtcattctca |
1004 |
T |
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