View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_15 (Length: 426)
Name: NF13346_low_15
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 4624213 - 4624606
Alignment:
| Q |
8 |
ccccacatagctaatccaatgaaactgaatagaataacatctttttcttttagttcacagaaccttcgacattattcatgccactatattaattttcttt |
107 |
Q |
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| T |
4624213 |
ccccaaatagccaatccaatgaaaccgaatagaataatatcttt-------agttcacagaaccttcgacattattcatgccactatattaattttcttt |
4624305 |
T |
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| Q |
108 |
aacataaaaacaaaagtgcattttagtgcatagnnnnnnncttatgctccaaggcatagcacatggtttccattttccaaaaccaatcaaacttaaccat |
207 |
Q |
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| T |
4624306 |
agcataaaaacaaaagtgcattttagtgcatagtttttttcttatgctccaaggcatagcacatggtttccattttccaaaaccaatcaaacttaaccat |
4624405 |
T |
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| Q |
208 |
attaaaaccctttcctaaacctcttcacttcacattcacaaaatcacaatcactattattcactcaaacaaagttaacaaacaaattaatcaaacacata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4624406 |
attaaaaccctttcctaaacctcttcacttcacattcacaaaatcacaatcactattattcactcaaacaaagttaacaaacaaattaatcaaacacata |
4624505 |
T |
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| Q |
308 |
atcatacaaactatcaaactcaatggaaacttcacctcccagctcagctccatccaccgtccgtcccttcacctgtgatggcacgatgggtggccacctt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4624506 |
atcatacaaactatcaaactcaatggaaacttcacctcccagctcagctccatccaccgtccgtcccttcacctgtgatggcacgatgggcggccacctt |
4624605 |
T |
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