View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_25 (Length: 250)
Name: NF13346_low_25
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_25 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 23171306 - 23171541
Alignment:
| Q |
14 |
atattagggtgagtctggacatctacggatccaaaatggacggtccaaatccctttgtgcggccttggttgagtgtatttagggtgagtctataaaatga |
113 |
Q |
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| T |
23171306 |
atattagggtgagtctggacatctgcggatccgaaatgaacggtccaaatacctttgtgcggccttggttgagtgtatttagggtgagtctatacaatg- |
23171404 |
T |
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| Q |
114 |
tatgtgtgttggctgctagt--gagttgagaggacccgattttttaaggaattgatcaatatgaatatatattttgttccagataattattgtgaaagtt |
211 |
Q |
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| T |
23171405 |
-atgtgtattggctgctagtgagagctgagagga-ccaatttttcaaggaattgatcaatatgaatatataatttgttccagataattattgtgaaagtt |
23171502 |
T |
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| Q |
212 |
aggagaaatgtgaggtacagactaggtggaggggatgtt |
250 |
Q |
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| T |
23171503 |
aggagaaatatgaggtacagactgggtgtaagggatgtt |
23171541 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 23185943 - 23186041
Alignment:
| Q |
152 |
tttttaaggaattgatcaatatgaatatatattttgttccagataattattgtgaaagttaggagaaatgtgaggtacagactaggtggaggggatgtt |
250 |
Q |
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| T |
23185943 |
ttttgaaggaattgatcaatatgaatatataatttgttccagataattattgtgaaagttaggagaaatatgaggtacagactaggtgtaggggatgtt |
23186041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23176002 - 23176051
Alignment:
| Q |
128 |
gctagtgagttgagaggacccgattttttaaggaattgatcaatatgaat |
177 |
Q |
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| T |
23176002 |
gctagtgacttgagatgacccgatttaataaggaattgatcaatatgaat |
23176051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 23176091 - 23176145
Alignment:
| Q |
176 |
atatatattttgttccagataattattgtgaaagttaggagaaatgtgaggtaca |
230 |
Q |
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| T |
23176091 |
atatattttttgctccagataattatcgtaaaagttaggagaaatatgagttaca |
23176145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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