View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_27 (Length: 240)
Name: NF13346_low_27
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7292465 - 7292243
Alignment:
| Q |
1 |
catttgaagatctgagagattagagaaatgtctcgacgtttcggagaatcaacgaaatcagcttctgcatcaaatccatcatgttcatcagggaacagtt |
100 |
Q |
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| T |
7292465 |
catttgaagatctgagagattagagaaatgtctcgacgtttcggagaatcaacgaaatcagcttctgcatcaaatccatcatgttcatcagggaacagtt |
7292366 |
T |
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| Q |
101 |
ccaacaatgatcctggcgatgttggcgatttcgaatgtaacatatgttttgatttggcacaggatccagtgatcacactttgtggtcatttattttgttg |
200 |
Q |
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| T |
7292365 |
ccaacaatgatcctggcgatgttggcgatttcgaatgtaacatatgttttgatttggcacaggatccagtgatcacactttgtggtcatttattttgttg |
7292266 |
T |
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| Q |
201 |
gccatgtctgtatagatggttac |
223 |
Q |
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||||||||||||||| ||||||| |
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| T |
7292265 |
gccatgtctgtataggtggttac |
7292243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 23324218 - 23324259
Alignment:
| Q |
180 |
ttgtggtcatttattttgttggccatgtctgtatagatggtt |
221 |
Q |
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| T |
23324218 |
ttgtggtcatttgttttgttggccatgcttgtatagatggtt |
23324259 |
T |
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