View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_31 (Length: 216)
Name: NF13346_low_31
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 6482741 - 6482922
Alignment:
| Q |
17 |
aaaatcagtaaaatagtaacaggaagnnnnnnnntggcaaatgaagaacgcatgtttcaagaaattcaatctgtacaccatcaatttacaatagaacatg |
116 |
Q |
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| T |
6482741 |
aaaatcagtaaaatagtaacgggaagaaaaaaaatggcaaatgaagaacgcatgtttcaagaaattcaatctgtacaccatcaatttacaatagaacatg |
6482840 |
T |
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| Q |
117 |
accc---------nnnnnnnnntctgagtaatgctatatatctaaaagaatttgatcacgatatggtcacgaaaagaaagtt |
189 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
6482841 |
acccaaaaaaaaaaaaaaaaattctgagtaatgctatatatctagaagaatttgatcacgatatggtcgcgaaaagaaagtt |
6482922 |
T |
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