View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13346_low_6 (Length: 660)

Name: NF13346_low_6
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13346_low_6
NF13346_low_6
[»] chr2 (5 HSPs)
chr2 (1-392)||(1614917-1615302)
chr2 (1-344)||(24455839-24456175)
chr2 (464-648)||(1615407-1615589)
chr2 (464-648)||(24455106-24455282)
chr2 (341-390)||(24455400-24455449)
[»] chr8 (4 HSPs)
chr8 (1-344)||(43228075-43228410)
chr8 (486-574)||(43227403-43227489)
chr8 (123-322)||(14839131-14839323)
chr8 (348-390)||(43227620-43227662)
[»] chr3 (3 HSPs)
chr3 (115-346)||(49234306-49234533)
chr3 (115-344)||(49233735-49233959)
chr3 (475-556)||(48909245-48909326)
[»] chr1 (4 HSPs)
chr1 (115-344)||(50862518-50862741)
chr1 (291-344)||(47723984-47724037)
chr1 (291-344)||(47730976-47731029)
chr1 (479-546)||(35361052-35361119)
[»] chr7 (1 HSPs)
chr7 (123-322)||(27962367-27962559)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 1614917 - 1615302
Alignment:
Q  1 aaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaacaatacaaacagccggttaaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614917 aaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaacaatacaaacagccggttaaaaaga 1615016  T
Q  101 caatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagaga 200  Q
    |||||         |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  1615017 caatatttttttt-gtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagt-----tgaaacataaagaga 1615110  T
Q  201 aaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1615111 aaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctc 1615210  T
Q  301 taaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagccattcttctttcaagcttcacaatgttgaatttgcctacc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1615211 taaattatgcagaaaatcacctcgatctctctccaaactatgcatatatagtcattcttctttcaagcttcacaatgttgaatttgcctacc 1615302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 24456175 - 24455839
Alignment:
Q  1 aaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaacaatacaaacagccggttaaaaaga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||    
T  24456175 aaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaactaacaggagaacaatacaaacagccagttaaaaaga 24456076  T
Q  101 caatannnnnnnnngtaaattgagccaaaacacat-gaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagag 199  Q
    |||||         ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| |||||||     ||| | || |  |||    
T  24456075 caataattttttt-gtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaaccgatatggtgcag-----ctggaccaca--gag 24455984  T
Q  200 aaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagct 299  Q
    |||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||  |||||||||||    
T  24455983 aaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagct 24455884  T
Q  300 ctaaattatgcagaaaatcacctcgatctctctccaaactatgca 344  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  24455883 ctaaattatgcagaaaatcacctcgatctcgctccaaattatgca 24455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 464 - 648
Target Start/End: Original strand, 1615407 - 1615589
Alignment:
Q  464 ctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaa 563  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1615407 ctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccataaaataagggggaaa 1615506  T
Q  564 aaataacataagattgcaacctgcaactacagtgactgtgacatcaagtaagattttttcccatcaaacagtacttgattttgat 648  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  1615507 aaataacataagattgcaacctgcaaccacagtgactgtgacatc--gtaagattttttcccatcaaacaatacttgattttgat 1615589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 464 - 648
Target Start/End: Complemental strand, 24455282 - 24455106
Alignment:
Q  464 ctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaa-ttcaaacctagccacaccaccatccatacaataagg--ggg 560  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||  |      
T  24455282 ctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatgaatttcaaatctagccacaccaccatccataaaatacggaagaa 24455183  T
Q  561 aaaaaataacataagattgcaacctgcaactacagtgactgtgacatcaagtaagattttttcccatcaaacagtacttgattttgat 648  Q
    |||||| ||||||||||||||||||||||| ||||           | |||||||||||||||||||||||||  |||||||||||||    
T  24455182 aaaaaaaaacataagattgcaacctgcaaccacag-----------taaagtaagattttttcccatcaaacaaaacttgattttgat 24455106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 24455449 - 24455400
Alignment:
Q  341 tgcatatatagccattcttctttcaagcttcacaatgttgaatttgccta 390  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24455449 tgcatatatagtcattcttctttcaagcttcacaatattgaatttgccta 24455400  T

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Target: chr8 (Bit Score: 153; Significance: 9e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 43228410 - 43228075
Alignment:
Q  1 aaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagcaacaggagaacaatacaaacagccggttaaaaaga 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||    
T  43228410 aaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagcaacaggagaccaatacaaacagccagttaaaaaga 43228311  T
Q  101 caatannnnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagaga 200  Q
    || ||         |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |      |||||||| |||  | |||||    
T  43228310 cagta-ttttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatg-----ttgcagctggaac--acagaga 43228219  T
Q  201 aaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctc 300  Q
     |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | |||||||| |||||||||||||||||||||||||  |||| ||| |||    
T  43228218 caaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaactc 43228119  T
Q  301 taaattatgcagaaaatcacctcgatctctctccaaactatgca 344  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  43228118 taaattatgcagaaaatcaccccgatctcactccaaattatgca 43228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 486 - 574
Target Start/End: Complemental strand, 43227489 - 43227403
Alignment:
Q  486 tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataa 574  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||    
T  43227489 tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataa--ggaaaaaaataacataa 43227403  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 322
Target Start/End: Complemental strand, 14839323 - 14839131
Alignment:
Q  123 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 222  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 14839231  T
Q  223 aaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 322  Q
    ||||  || |||| |||||| |||| |||||||||||  | |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839230 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 43227662 - 43227620
Alignment:
Q  348 atagccattcttctttcaagcttcacaatgttgaatttgccta 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaatgttgaatttgccta 43227620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 5e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 115 - 346
Target Start/End: Original strand, 49234306 - 49234533
Alignment:
Q  115 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| ||||||||||||     
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacaca 49234400  T
Q  215 gggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-aga 313  Q
    |||| |||||||||||||||  ||||||||||| |||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||| |||    
T  49234401 gggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaaga 49234500  T
Q  314 aaatcacctcgatctctctccaaactatgcata 346  Q
    |||||||||||||||| ||||||| ||||||||    
T  49234501 aaatcacctcgatctcgctccaaattatgcata 49234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 115 - 344
Target Start/End: Original strand, 49233735 - 49233959
Alignment:
Q  115 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 214  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| |||||     
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacaca 49233829  T
Q  215 gggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 314  Q
    |||| |||| ||||||||||  ||||||||| | |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49233830 gggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaa 49233929  T
Q  315 aatcacctcgatctctctccaaactatgca 344  Q
    ||||||||||||||| ||||||| ||||||    
T  49233930 aatcacctcgatctcgctccaaattatgca 49233959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 556
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
Q  475 tcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataag 556  Q
    |||||||||| ||||||| ||||||| ||||||||||| | | |||| |||| |||||| | ||||||||||||| ||||||    
T  48909245 tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag 48909326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 115 - 344
Target Start/End: Complemental strand, 50862741 - 50862518
Alignment:
Q  115 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacg 214  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| ||||||||||||     
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacaca 50862648  T
Q  215 gggaagaaaaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaa 314  Q
    |||| ||||||| |||||||  || |||||||| ||||||| || | ||| | |||||||||||||||||||  ||||| ||||||||||||||||||||    
T  50862647 gggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaa 50862548  T
Q  315 aatcacctcgatctctctccaaactatgca 344  Q
    ||||||||||||||| ||||||| ||||||    
T  50862547 aatcacctcgatctcgctccaaattatgca 50862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  291 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 344  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  291 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 344  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
Q  479 cttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatcc 546  Q
    |||||| ||||||  ||||||||||||||||||| | |||||| |||||   ||||||||||||||||    
T  35361052 cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc 35361119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 322
Target Start/End: Original strand, 27962367 - 27962559
Alignment:
Q  123 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaa 222  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaa 27962459  T
Q  223 aaaatgccactacatagcagctgcaataccaaaacacttctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 322  Q
    ||||  || |||| |||||| |||| |||||||||||  | |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962460 aaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

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