View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13346_low_8 (Length: 608)

Name: NF13346_low_8
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13346_low_8
NF13346_low_8
[»] chr8 (2 HSPs)
chr8 (12-400)||(34409141-34409529)
chr8 (530-594)||(34408950-34409014)
[»] chr2 (1 HSPs)
chr2 (255-341)||(43853134-43853220)
[»] chr6 (1 HSPs)
chr6 (214-341)||(7979381-7979508)
[»] chr7 (1 HSPs)
chr7 (196-341)||(14198760-14198905)
[»] chr3 (1 HSPs)
chr3 (246-321)||(38827385-38827460)
[»] chr4 (1 HSPs)
chr4 (256-329)||(42986374-42986447)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 34409529 - 34409141
Alignment:
Q  12 agagacagcagaaatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409529 agagacagcagaaatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacat 34409430  T
Q  112 gttgggcatatagattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409429 gttgggcatatagattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaa 34409330  T
Q  212 tgatatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409329 tgatatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttg 34409230  T
Q  312 ccatagagtgaacaatgtgattatccatgacattatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409229 ccatagagtgaacaatgtgattatccatgacattatcaggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa 34409141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 530 - 594
Target Start/End: Complemental strand, 34409014 - 34408950
Alignment:
Q  530 taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgat 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34409014 taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgat 34408950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 43853220 - 43853134
Alignment:
Q  255 ctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgtgattatccatga 341  Q
    |||||| ||||| ||||| | | ||||||| |||||||||||||||||||||||||||||||||||| | |  ||||||||||||||    
T  43853220 ctcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatga 43853134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 7979381 - 7979508
Alignment:
Q  214 atatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgcc 313  Q
    ||||| ||||| ||||||   ||||||||||||||||| |  ||||| || || ||||| | | |||| || |||||||||||||| |||||||||||||    
T  7979381 atataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgcc 7979480  T
Q  314 atagagtgaacaatgtgattatccatga 341  Q
    | || ||| | |||||||| ||||||||    
T  7979481 aaagtgtgtagaatgtgatgatccatga 7979508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 341
Target Start/End: Original strand, 14198760 - 14198905
Alignment:
Q  196 agttgttgtggaacaatgatatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcat 295  Q
    ||||||||||| ||||  ||||| |||||||| |||   |||||||||| |||||| || |||||||| || || || | | | || || ||||||||||    
T  14198760 agttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcat 14198859  T
Q  296 gcatttcaaccatttgccatagagtgaacaatgtgattatccatga 341  Q
    |||| ||||||||||||||||  ||| | |||||||| | ||||||    
T  14198860 gcatctcaaccatttgccataacgtgtataatgtgatgaaccatga 14198905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 38827385 - 38827460
Alignment:
Q  246 ttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtg 321  Q
    |||||| | |||||||||||| || |||||  |||| || || ||||||||||| |||||||||||||||| ||||    
T  38827385 ttgacccaactcatgatacctatccaatctctttccgggaactatttcatgcatctcaaccatttgccatatagtg 38827460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 42986374 - 42986447
Alignment:
Q  256 tcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgt 329  Q
    ||||||||| ||||||||||| ||||||  ||   |||||||||||||| ||||||||||  |||| |||||||    
T  42986374 tcatgatacttgtcaaatctttttcctgatacggattcatgcatttcaatcatttgccatgcagtgtacaatgt 42986447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University