View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13346_low_9 (Length: 530)
Name: NF13346_low_9
Description: NF13346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13346_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 35733388 - 35733862
Alignment:
| Q |
17 |
aaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcagccagagccattttgatgtatgcacaatgcacaatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35733388 |
aaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcag-------------gatgtatgcacaatgcacaat- |
35733473 |
T |
|
| Q |
117 |
cacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctcttcaagttcactgagccagtaaatcacaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35733474 |
------acgattaaaaagtttgagcaaagaaaataaggtaggatacatacaataaaaaa-gcaacctctcttcaagttcactgagccagtaaatcacaaa |
35733566 |
T |
|
| Q |
217 |
gacactcccnnnnnnnttaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcatt |
316 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733567 |
gacactcccaaaaaaattaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcatt |
35733666 |
T |
|
| Q |
317 |
ctaccaagcaagctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacatgaccaaaaacagtttagaatagtttaggaagatcactt |
416 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733667 |
ctaccaagcaggctgattgttaaaaaatttgtagcgatcacaaacgatgtaggaatttacatgaccaaaaacagtttagaatagtttaggaagatcactt |
35733766 |
T |
|
| Q |
417 |
taccaacaacaatatccatctcttcttgacaaatagttccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaata |
512 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733767 |
taccaacaacaatatccatctcttcttgaccaatagttccccttaagaaatgaaggattccacaataagataaaacatggacttcgactcttaata |
35733862 |
T |
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