View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13347_high_2 (Length: 549)
Name: NF13347_high_2
Description: NF13347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13347_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 25107094 - 25106592
Alignment:
| Q |
1 |
agccatactaagcatataccaacttatgcaataatcaagtcacgcgataaatatctactcaatctaaaagtgaaccaagtaataatcacctcttatacag |
100 |
Q |
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| T |
25107094 |
agccatattaagcatataccaacttatgcaataatcaagtcacacgataaatatctactcaatctaaaagtgaaccaagtaataatcacctcttatacag |
25106995 |
T |
|
| Q |
101 |
ctctcccattcagttcttagagcatctggtatatgatcaaaccaaattccatcaagttctttcaaaaagtgagcacgagactgatcatatgaagtctgcc |
200 |
Q |
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| T |
25106994 |
ctctcccattcagttcttagagcatctggtatatgatcaaaccaaattccatcaagttctttcaaaaagtgagcacgagactgatcatatgaagtctgcc |
25106895 |
T |
|
| Q |
201 |
aatggaaactagaaactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatggataaatcaatcatatattcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25106894 |
aatggaaactagaaactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatcgataaatcaatcatatattcct |
25106795 |
T |
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| Q |
301 |
atagcatgtataattgtatatcatataaaaaactaaaggcgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtac |
400 |
Q |
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| T |
25106794 |
atagcatgtataattgtatatcatataaaaaactaaaggtgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtac |
25106695 |
T |
|
| Q |
401 |
caccacaatctagtaacaaatcaagatattgactgtaattaactttcatttctttctttgattccataatatgtttcttagatccctttagatagacaac |
500 |
Q |
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| T |
25106694 |
caccacaatctagtaacagatcaagatattgactgtaattaactttcattgctttctttgattccataatatgtttcttagatccctttagatagacaac |
25106595 |
T |
|
| Q |
501 |
gta |
503 |
Q |
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||| |
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| T |
25106594 |
gta |
25106592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 534
Target Start/End: Complemental strand, 25106487 - 25106457
Alignment:
| Q |
504 |
tccactgatcagtttcaaattggtaccacag |
534 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25106487 |
tccactgatcagtttcaaattggtaccacag |
25106457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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