View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13347_high_6 (Length: 282)
Name: NF13347_high_6
Description: NF13347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13347_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 43869367 - 43869118
Alignment:
| Q |
20 |
aatacatactatacacagccacatgcaccaaatattaatcaatccaagtttgcagaaaagcaaacatggaagttaattaataaccagttgatgatattca |
119 |
Q |
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| T |
43869367 |
aatacatactatacacagccacatgcaccaaatattaatcaatccaaatttgcagaaaagcaaacatggaagttaattaataaccagttgatgatattca |
43869268 |
T |
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| Q |
120 |
tgtcagtggtaattagttggaaaagaagttgctcctcctccagcaaaacatgctgtcctcttaacaaaacgacctttcattcttggtctcttttctgcat |
219 |
Q |
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| T |
43869267 |
tgtcagtggtaattagttggaaaagaagttgctc---ctccagcaaaacatgctgtcctcttaacaaaacgacctttcattcttggtctcttttctgcat |
43869171 |
T |
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| Q |
220 |
tcaatttccttacttcatatcttatcttctttgcaaacaaacgtgttcttctt |
272 |
Q |
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| T |
43869170 |
tcaatttccttacttcatatcttatcttctttgcaaacaaacgtgttcttctt |
43869118 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 50054578 - 50054656
Alignment:
| Q |
192 |
cctttcattcttggtctcttttctgcattcaatttccttacttcatatcttatcttctttgcaaacaaacgtgttcttc |
270 |
Q |
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| T |
50054578 |
cctttcattcttggtctcttctctgcattcaatttcctaacctcgtaccttattttctttgagaacaaccttgttcttc |
50054656 |
T |
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