View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13347_low_3 (Length: 348)
Name: NF13347_low_3
Description: NF13347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13347_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 20181500 - 20181820
Alignment:
| Q |
19 |
aaaaagagccatattgtaaaacacttcaattccatgtaatcgacaataatcaatcttgttcttaatagacttcaacaagtaatgatcacccactggattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20181500 |
aaaaagagccatattgtaaaacacttcaattccatgtaatcgacaataatcaatcttgttcttaatagacttcaacaagtaatgatcacccactggattc |
20181599 |
T |
|
| Q |
119 |
tcacatggttttggtgatgacccagttaccaaaagcacacgaggtttccctggtcgaatgaaattcgaaaaattagggttttcacgaatccattttgacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20181600 |
tcacatggttttggtgatgacccagttaccaaaagcacacgaggtttccctggtcgaatgaaattcgaaaaattagggttttcacgaatccattttgacc |
20181699 |
T |
|
| Q |
219 |
tttgctcatcccaattcgaaatttttggtcctaaactatacggctcattggagctacgtttctcaaattcatcgccttg---ttcttcttcttcttcatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20181700 |
tttgctcatcccaattcgaaatttttggtcctaaactatacggctcattggagctacgtttctcaaattcatcgccttgttcttcttcttcttcttcatc |
20181799 |
T |
|
| Q |
316 |
gaccaatattgtgatgatgtc |
336 |
Q |
| |
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|||||| |||||| ||||||| |
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| T |
20181800 |
gaccaagattgtgttgatgtc |
20181820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 44268848 - 44269168
Alignment:
| Q |
19 |
aaaaagagccatattgtaaaacacttcaattccatgtaatcgacaataatcaatcttgttcttaatagacttcaacaagtaatgatcacccactggattc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44268848 |
aaaaagagccatattgtaaaacacttcaattccatgtaatcgacaataatcaatcttgttcttaatagacttcaacaagtaatgatcacccactggattc |
44268947 |
T |
|
| Q |
119 |
tcacatggttttggtgatgacccagttaccaaaagcacacgaggtttccctggtcgaatgaaattcgaaaaattagggttttcacgaatccattttgacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44268948 |
tcacatggttttggtgatgacccagttaccaaaagcacacgaggtttccctggtcgaatgaaattcgaaaaattagggttttcacgaatccattttgacc |
44269047 |
T |
|
| Q |
219 |
tttgctcatcccaattcgaaatttttggtcctaaactatacggctcattggagctacgtttctcaaattcatcgccttg---ttcttcttcttcttcatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44269048 |
tttgctcatcccaattcgaaatttttggtcctaaactatacggctcattggagctacgtttctcaaattcatcgccttgttcttcttcttcttcttcatc |
44269147 |
T |
|
| Q |
316 |
gaccaatattgtgatgatgtc |
336 |
Q |
| |
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|||||| |||||| ||||||| |
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|
| T |
44269148 |
gaccaagattgtgttgatgtc |
44269168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 45168518 - 45168437
Alignment:
| Q |
24 |
gagccatattgtaaaacacttcaattccatgtaatcgacaataatcaatcttgttcttaatagacttcaacaagtaatgatc |
105 |
Q |
| |
|
|||||||||| |||| | |||||| |||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
45168518 |
gagccatattataaacaatttcaatcccatgtaatctacaataatcaatcttattcttaatagactttaacaaataatgatc |
45168437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 49678962 - 49678888
Alignment:
| Q |
61 |
acaataatcaatcttgttcttaatagacttcaacaagtaatgatcacccactggattctcacatggttttggtga |
135 |
Q |
| |
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||||||||||||||| |||||||| || |||||||| ||||||||||| || ||||| ||||| ||||| ||||| |
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| T |
49678962 |
acaataatcaatcttattcttaatcgatttcaacaaataatgatcaccaacaggattttcacacggtttaggtga |
49678888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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