View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13347_low_5 (Length: 334)
Name: NF13347_low_5
Description: NF13347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13347_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 6227397 - 6227081
Alignment:
| Q |
1 |
gccactaaggccagtgtgatgagcaatagcaacatcggcaccgatgacatgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggc |
100 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6227397 |
gccactaaggccagtgtgttgagcaatagcaatatcggcaccgatgacatgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggt |
6227298 |
T |
|
| Q |
101 |
gggaggttgcctacgactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatgagggtacaa |
200 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6227297 |
gggaggttgcctcctactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatggaggtacaa |
6227198 |
T |
|
| Q |
201 |
acatacccgcaatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6227197 |
acatacccgcaatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcatt |
6227098 |
T |
|
| Q |
301 |
gccgaaacctgtagata |
317 |
Q |
| |
|
||||||||||||||||| |
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| T |
6227097 |
gccgaaacctgtagata |
6227081 |
T |
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