View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13347_low_6 (Length: 313)
Name: NF13347_low_6
Description: NF13347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13347_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36290532 - 36290239
Alignment:
| Q |
1 |
ccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290532 |
ccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcc |
36290433 |
T |
|
| Q |
101 |
tgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290432 |
tgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagg |
36290333 |
T |
|
| Q |
201 |
acacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgttaacatcggtctaggttatgtct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36290332 |
acacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtct |
36290239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 36313013 - 36312739
Alignment:
| Q |
3 |
atggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctg |
102 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
36313013 |
atggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagattaaggatattatcatggactatataactcctg |
36312914 |
T |
|
| Q |
103 |
aagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgaggac |
202 |
Q |
| |
|
|||| || |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36312913 |
aagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgaggac |
36312814 |
T |
|
| Q |
203 |
acttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgttaacat |
277 |
Q |
| |
|
| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
36312813 |
attagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgttaacat |
36312739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
102 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
201 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
202 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
272 |
Q |
| |
|
||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
35 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
118 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
|
|
| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
102 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
201 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
202 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
272 |
Q |
| |
|
||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
35 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
96 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
236 |
tgaaggattgttggagaaggttactgctgatgatgtt |
272 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University