View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13348_low_1 (Length: 514)
Name: NF13348_low_1
Description: NF13348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13348_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 502
Target Start/End: Complemental strand, 7092183 - 7091702
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactcttttacactgcttaatatcattactagccaaagcatg |
120 |
Q |
| |
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||||||||||||| ||||||| ||||||||||| || |||||| ||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||| |
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| T |
7092183 |
ggtgaggattgcccccactct--aaacacatgttcgggccatctgttatccaatgtgggactcttttacacagctcaatatcattaccagccagagcata |
7092086 |
T |
|
| Q |
121 |
tgtacattgtagcgaaatttcaaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagacaactgcaagtcaaagactcct |
220 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
7092085 |
tgtacattgcagcgaaatttcaaaagcatgtccatgataagagactactttgatagtaaattgaaaaactttaatagacaactgcaagtgaaagattcct |
7091986 |
T |
|
| Q |
221 |
gctgagatacttacaaaattcttgcaaacatcacagcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaact |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
7091985 |
gctgagatacttacaaaattcttgcaaacatcacatcttgggtgatgcttctccctgtagcaggatttatggtaaggacggttgctagacatggaaaact |
7091886 |
T |
|
| Q |
321 |
gtaaaggaacaaatggatatccaagtattgttcataatcgtattgagatagacaaagaaaaaagatacataatttgaaaaccctaactaatgaattgctg |
420 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||| | | |
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| T |
7091885 |
gtaaaggaacaaatggatatccaagtattattcataatcgtattgagataggcaaagaaaaaggatacataatttgaaaaccctaaataataaatttccg |
7091786 |
T |
|
| Q |
421 |
agtaaagtttcaacttgttttgattaaactcagttttgt---gttggcatcacagaaaaagaaactctaacctcataatcagtga |
502 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | |||||||| | ||||||||||||||||||||||||||| |
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| T |
7091785 |
agtaaagtttcaacttgttttgattaaactcagttgtgtcaagcaagcatcaca-cagaagaaactctaacctcataatcagtga |
7091702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 219 - 502
Target Start/End: Complemental strand, 7099106 - 7098825
Alignment:
| Q |
219 |
ctgctgagatacttacaaaattcttgcaaacatcacagcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7099106 |
ctgctgagatacttacaaaattcttgcaaacatcacatcttgggtgatacttctccctgtagcaggatttatggtaaggtcggttgctagacatggaaaa |
7099007 |
T |
|
| Q |
319 |
ctgtaaaggaacaaatggatatccaagtattgttcataatcgtattgagatagacaaagaaaaaagatacataatttgaaaaccctaactaatgaattgc |
418 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7099006 |
ctgtaaaggaacaaatgtatatccaagtattattcataatcgtattgagat--acaaagaaaaaagatacataatttgaaaaccctaactaatgaattgc |
7098909 |
T |
|
| Q |
419 |
tgagtaaagtttcaacttgttttgattaaactcagttttgtgttggcatcacagaaaaagaaactctaacctcataatcagtga |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7098908 |
tgagtaaagtttcaacttgttttgattaaactcagttttgtgtcggcatcacagaaaaagaaactctaacctcataatcagtga |
7098825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7104323 - 7104101
Alignment:
| Q |
1 |
tccccacaaaatcggtctgtggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactcttttacactgcttaata |
100 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7104323 |
tccccacaaaaccggtttgtggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactcttttacacggcttaata |
7104224 |
T |
|
| Q |
101 |
tcattactagccaaagcatgtgtacattgtagcgaaatttcaaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7104223 |
tcattactagccaaagcatgtgtacattgtagcgaaatttcaaaagcatgtccatgataagagaaaactttgatagtaaattgaaaaactctaatagaca |
7104124 |
T |
|
| Q |
201 |
actgcaagtcaaagactcctgct |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
7104123 |
actgcaagtgaaagactcctgct |
7104101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 39683317 - 39683381
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
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||||||||||||||||||| | ||||||||| | |||||||| |||||||||||||||||||| |
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| T |
39683317 |
ggtgaggattgcctccactttataaacacattgtcaggtcatcatctatccgatgtgggactctt |
39683381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 54368550 - 54368487
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| || ||| ||||| ||||| |||||||||||||| |
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| T |
54368550 |
ggtgaggattgcccccact-tataaacacattttcaggccatcttctatcggatgtgggactctt |
54368487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 33407703 - 33407797
Alignment:
| Q |
228 |
tacttacaaaattcttgcaaacatcacagcttgggtgatacttctccctgtagcaggatttatggtaaggtcggtcgctagacatggaaaactgt |
322 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| | |||| | ||||| |||||||||||||| || | | |||||||||| ||||| |
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| T |
33407703 |
tacttacaaagatcttgcaaacatcacaccttgggtgatgcagctccttatagcatgatttatggtaaggacgattcccagacatggaatactgt |
33407797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 2029803 - 2029740
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | ||||||| | |||||||||||||||||||| |
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| T |
2029803 |
ggtgaggattgcctccact-tataaacacattgtcaggtcatgtcctatccgatgtgggactctt |
2029740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 33606104 - 33606167
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||||| | ||| | ||||||||| || ||| ||||| |||||||||||||||||||| |
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|
| T |
33606104 |
ggtgaggattgcccctact-tataaacacattttcaggccatctcctatccgatgtgggactctt |
33606167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 37840371 - 37840308
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| | ||||||||| |||||| ||||||||||||| |
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| T |
37840371 |
ggtgatgattgcctccact-tataaacacattgtcaggtcatctcctatccaatgtgggactctt |
37840308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 6001468 - 6001548
Alignment:
| Q |
6 |
acaaaatcggt--ctgtggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| | |||||| || | ||||||||| |||||||||||||||||||| |
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| T |
6001468 |
acaaaatcggtttctgaggtgaggattgcccccact-tataaacatattgtcaggtcatcttctatccgatgtgggactctt |
6001548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 35609540 - 35609603
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||||| ||||| | ||||||| |||||||| ||||| | |||| ||||||||||||| |
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|
| T |
35609540 |
ggtgaggattgcccccact-tataaacacttgtttaggccatctcccatccaatgtgggactctt |
35609603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 51459880 - 51459943
Alignment:
| Q |
21 |
ggtgaggattgcctccactctctaaacacatgtttaggtcatctgctatccgatgtgggactctt |
85 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| ||||| |||| |||||||||||||||||||| |
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|
| T |
51459880 |
ggtgaggattgcccccact-tataaacacattgttaggccatcacctatccgatgtgggactctt |
51459943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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