View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13348_low_2 (Length: 390)
Name: NF13348_low_2
Description: NF13348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13348_low_2 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 6555367 - 6555729
Alignment:
| Q |
10 |
aagaatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555367 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6555466 |
T |
|
| Q |
110 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555467 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
6555566 |
T |
|
| Q |
210 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6555567 |
caatggcggacgagaagaaatggctgaaagtaacctgttggttttggaggctctaaaaccaaatagcaacttgaagaagctcaacattacacactacaaa |
6555666 |
T |
|
| Q |
310 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaactt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
6555667 |
ggtagtagatttccaaattggctaaggggttgtcatttacccaacttagtatctcttgaactt |
6555729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 6527801 - 6528162
Alignment:
| Q |
10 |
aagaatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527801 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6527900 |
T |
|
| Q |
110 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
209 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6527901 |
ttcatggaacaattcatattaaaggcttgggtaatgtcagtgatactgcagatgctgccccattaaatttgaaagatatagaagaattgcatactgagtt |
6528000 |
T |
|
| Q |
210 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaa |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6528001 |
caatggcggaagagaagaaatggctgaaagcaacctgttagtcttggaggctatacaaccaaatagcaacttgaagaagctcaacatcacacactacaaa |
6528100 |
T |
|
| Q |
310 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaact |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6528101 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttcaact |
6528162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 6521061 - 6521419
Alignment:
| Q |
10 |
aagaatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6521061 |
aagaatatgggaaagctaagtaatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
6521160 |
T |
|
| Q |
110 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6521161 |
ttcatggaacaattcatattaaagggttgggtaatgttagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatacagagtt |
6521260 |
T |
|
| Q |
210 |
caatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaa |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6521261 |
caatggcggaagagaagaaatggctgaaagcaacctgttagtcttggaggctatacaatcaaatagcaacttgaagaagctcaacatcacacgctacaaa |
6521360 |
T |
|
| Q |
310 |
ggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaact |
371 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||||||||||||||||||||||| |||| |
|
|
| T |
6521361 |
ggtagtagatttccaaattggc---gtgattgtcatttacccaacttagtatctcttcaact |
6521419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 6735065 - 6734699
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6735065 |
atatgggaaagctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccagcttca |
6734966 |
T |
|
| Q |
114 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatact |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| | |
|
|
| T |
6734965 |
tggaacaattcatattaaagggctgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaattacaaatg |
6734866 |
T |
|
| Q |
205 |
gagttcaatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacact |
304 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6734865 |
gagttcaatggcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacact |
6734766 |
T |
|
| Q |
305 |
acaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaact |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
6734765 |
acaaaggtagtagatttccaaattggctaaggggtagtcatttacgcaacttagtatctcttgaact |
6734699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 8453761 - 8453390
Alignment:
| Q |
18 |
gggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatgga |
117 |
Q |
| |
|
|||||||||||| |||||||| | | ||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8453761 |
gggaaagctaaacaatcttcaaagcttgtcatattttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaaccatcttcatgga |
8453662 |
T |
|
| Q |
118 |
acaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatactgagt |
208 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||| ||||||| |||| || ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
8453661 |
gcaattgatattgaagggttgggtaatgttagcgatcttgcagattctgctactgtaaatttgaaagatacgaaatatttagaagaattacatatgaagt |
8453562 |
T |
|
| Q |
209 |
tcaatggcggacgagaaga------------aatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacat |
296 |
Q |
| |
|
| |||||||| ||||||| |||||||||||| || ||| ||| ||||||||||| |||||||||| |||||||||| ||| | ||| |
|
|
| T |
8453561 |
ttgatggcggaagagaagaaatggatgagtcaatggctgaaagcaatgtgtcagtcttggaggctctccaaccaaatagaaacttgaagaggcttaccat |
8453462 |
T |
|
| Q |
297 |
cacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaa |
368 |
Q |
| |
|
| || | |||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8453461 |
ctcaaaatacaaaggtaatagctttccaaattggataaggggttatcatttaccaaacttagtatctcttaa |
8453390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 256 - 376
Target Start/End: Original strand, 6840067 - 6840187
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
355 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||| ||| ||||||| ||||||||||| | |||||||| |||||| |
|
|
| T |
6840067 |
gaggctcttcaaccaaatagcaacttggagaagctcaacataaaacactacaaaggtaatagctttccaagttggctaagggcttgtcatttatccaact |
6840166 |
T |
|
| Q |
356 |
tagtatctcttaaacttgatg |
376 |
Q |
| |
|
||||||||||| |||| |||| |
|
|
| T |
6840167 |
tagtatctcttcaactggatg |
6840187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 6946401 - 6946248
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||| || | | |||||||||||||||| || ||||| |||||||| || || |||| ||||| ||||||||||| |
|
|
| T |
6946401 |
atataggaaatctaaacaatcttcaggccttaccttattttattgtggaagagcagaatgagtctgatcttaaggagttggggaaactaaaccatcttca |
6946302 |
T |
|
| Q |
114 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgc |
167 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
6946301 |
tggaacaattgatattaaagggttgggtaatgtgattgatcctgcagatgctgc |
6946248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 6946138 - 6946023
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
355 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| ||||||| | |||| |
|
|
| T |
6946138 |
gaggctcttcaaccaaagagcaacttgaagaagctcaccatcacatactacaatggcagtagctttccaaattggctaagtggttttcatttatcaaact |
6946039 |
T |
|
| Q |
356 |
tagtatctcttaaact |
371 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6946038 |
tagtatctcttaaact |
6946023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 8570114 - 8570232
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||| ||||||| ||||||| || ||||| |||||||||||| ||| |||| || |||||||| |
|
|
| T |
8570114 |
ttggatgctcttcaaccaaatagcaacttgaagaggctcaccatcacatactacaatggcagtagctttccaaattggttaatgggttttcttttaccca |
8570213 |
T |
|
| Q |
353 |
acttagtatctcttaaact |
371 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8570214 |
acttagtatctcttaaact |
8570232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 6729885 - 6730003
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6729885 |
ttggaggctctacaaccaaatagaaacttgaagtgacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6729984 |
T |
|
| Q |
353 |
acttagtatctcttaaact |
371 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6729985 |
acttagtatctcttgaact |
6730003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 6481145 - 6481258
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
||||||||||| |||||||||| | ||| |||| ||| | |||| |||| || | ||||| |||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6481145 |
ttggaggctcttcaaccaaatagaagcttaaagaggcttagcatctcacaatatagaggtaatagatttccaaattggataaggggttgtcatttaccca |
6481244 |
T |
|
| Q |
353 |
acttagtatctctt |
366 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6481245 |
acttagtatctctt |
6481258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 6449957 - 6450075
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||| || | ||| ||| |||||||||| ||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
6449957 |
ttggaggctctacaaccaaatagaaacctaaagagacttacaatctcacgatacaaaggtaatagctttccaaattggctgaggggttgtcatttaccca |
6450056 |
T |
|
| Q |
353 |
acttagtatctcttaaact |
371 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6450057 |
acttagtatctcttgaact |
6450075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 369
Target Start/End: Complemental strand, 8470427 - 8470314
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
355 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | ||| ||||| |||| |||||||||| || |||||||| ||| |||||||| |||||||||| |||| |
|
|
| T |
8470427 |
gaggctcttcaaccaaataacaacttgaataggctttacatctcacaatacaaaggtaaaagctttccaaagtggataaggggttgtcatttaccaaact |
8470328 |
T |
|
| Q |
356 |
tagtatctcttaaa |
369 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8470327 |
tagtatctcttaaa |
8470314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 359
Target Start/End: Complemental strand, 7586738 - 7586635
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaact |
355 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||| | |||| ||||||||||||||| ||| ||| |||||||| | |||||| || |||||||||||| |
|
|
| T |
7586738 |
gaggctcttcaaccaaatagcagcttgaagaggcttatcatctcacactacaaaggtaataggtttgcaaattggatgaggggttgtgatttacccaact |
7586639 |
T |
|
| Q |
356 |
tagt |
359 |
Q |
| |
|
|||| |
|
|
| T |
7586638 |
tagt |
7586635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 6486191 - 6486270
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaag |
335 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| ||||||||| |
|
|
| T |
6486191 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaag |
6486270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 6932419 - 6932336
Alignment:
| Q |
256 |
gaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggt |
339 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| || ||||||||||| | | ||||||| |||||||| |||| |
|
|
| T |
6932419 |
gaggctcttcaatcaaatagcaacttgaagaagctcaacatcaaacgctacaaaggtaatcgttttccaagttggctaaagggt |
6932336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 6480885 - 6480994
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||| ||||||||||| | |||||| || ||| | |||||| ||||||||| | |||| ||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
6480885 |
atataggaaagctaaacagtcttcaaacactgccttattttgttgtggaagagaaaaatggatctgatctcaaagagttggaaaaactaaaccatcttca |
6480984 |
T |
|
| Q |
114 |
tggaacaatt |
123 |
Q |
| |
|
||||| |||| |
|
|
| T |
6480985 |
tggaaaaatt |
6480994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 8588778 - 8588694
Alignment:
| Q |
103 |
aaccatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
187 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8588778 |
aaccatcttcatgggaaaattcatataaaaggtttgggtaatgtaattgatcctgcagatgctgtgacagccaatttgaaagata |
8588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 8588607 - 8588500
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||| | |||| || | |||||||| | ||| |||||||||||| || |||| |||||||| |
|
|
| T |
8588607 |
ttggaggctcttcaaccaaatagaaacttgaagaggcttaccatctcaaaatacaaaggcaataggtttccaaattggata------agtcgtttaccca |
8588514 |
T |
|
| Q |
353 |
acttagtatctctt |
366 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8588513 |
acttagtatctctt |
8588500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 6898912 - 6898849
Alignment:
| Q |
302 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctct |
365 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | |||||||||||| ||||||||||| |
|
|
| T |
6898912 |
actacagaggcagtagatttccaaattggcttggggttcatcatttacccaatttagtatctct |
6898849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 6141159 - 6141046
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
||||||||||| |||||||||| ||| | | || ||||| ||||| |||||| ||||||||| ||||| |||||||| ||| | |||| |||||| |
|
|
| T |
6141159 |
ttggaggctcttcaaccaaatagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctaccca |
6141060 |
T |
|
| Q |
353 |
acttagtatctctt |
366 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6141059 |
atttagtatctctt |
6141046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 6167764 - 6167651
Alignment:
| Q |
253 |
ttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttaccca |
352 |
Q |
| |
|
||||||||||| |||||||||| || | | || ||||| ||||| |||||| ||||||||| |||||||||||||| ||| | |||| |||||| |
|
|
| T |
6167764 |
ttggaggctcttcaaccaaatagaaatctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatctaccca |
6167665 |
T |
|
| Q |
353 |
acttagtatctctt |
366 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
6167664 |
atttagtatctctt |
6167651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 13271758 - 13271822
Alignment:
| Q |
302 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
366 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||| ||||||| |||||||||||| |
|
|
| T |
13271758 |
actacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctctt |
13271822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 8406 - 8776
Alignment:
| Q |
10 |
aagaatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406 |
aagaatatgggaaagctaaataatcttcagaccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatc |
8505 |
T |
|
| Q |
110 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| || |
|
|
| T |
8506 |
ttcatggaacaattcatattaaagggttgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaatttca |
8605 |
T |
|
| Q |
201 |
tactgagttcaatggcggacgagaagaaatggctgaaagtaacctgttagttttggaggctctaaaaccaaatagcaacttgaagaagctcaacatcaca |
300 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||| | ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8606 |
aatggagttcaatggcggaagagaagaaatggatgaaagaagtgtgttagtcttggaggctttacaaccaaatagcaacttgaagaagctcaacatcaca |
8705 |
T |
|
| Q |
301 |
cactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaact |
371 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
8706 |
tgctacaaaggtagtagctttccaaattggctaaggggtagtcatttaccgaacttagtatctcttcaact |
8776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 2623665 - 2623847
Alignment:
| Q |
4 |
atgtcgaagaatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactca |
103 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||| | | ||| ||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||| | |
|
|
| T |
2623665 |
atgtcaaagcatatgggaaagctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaaagagttggcaaaacaaa |
2623764 |
T |
|
| Q |
104 |
accatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
187 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
2623765 |
accat-ttcatggaacaattcatattgaaggcttggataatgtcagcgatcttgcagatgctgctacagtaaatttgaaagata |
2623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 6574499 - 6574599
Alignment:
| Q |
267 |
accaaatagcaacttgaagaagctcaacatcacacactacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatctctt |
366 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||| | ||||||| || || || |||||||||||||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6574499 |
accaaatagcaacctacagaggctcaccatcaaatactacaatggcagcagctttccaaattggctaaggtgttctcatttacctaacttagtatctctt |
6574598 |
T |
|
| Q |
367 |
a |
367 |
Q |
| |
|
| |
|
|
| T |
6574599 |
a |
6574599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 977 - 925
Alignment:
| Q |
319 |
tttccaaattggctaaggggtagtcatttacccaacttagtatctcttaaact |
371 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
977 |
tttccaaattggataacaggttgtcatttacccaacttagtatctcttcaact |
925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 35141574 - 35141634
Alignment:
| Q |
302 |
actacaaaggtagtagatttccaaattggctaaggggtagtcatttacccaacttagtatc |
362 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
35141574 |
actacagaggtagtagctttccaaattggcttggggatcatcatttacccaatttagtatc |
35141634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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