View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13349_high_10 (Length: 213)
Name: NF13349_high_10
Description: NF13349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13349_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 39789764 - 39789950
Alignment:
| Q |
9 |
acatcatcatcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggtttagaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39789764 |
acatcatcatcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagacaaaacaaagggtttagaaga |
39789863 |
T |
|
| Q |
109 |
gttcaatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39789864 |
gttcaatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaatgaagagagattaagttatatggactcttct |
39789950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 39411978 - 39411826
Alignment:
| Q |
16 |
catcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggt---ttagaagagttc |
112 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||||| || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
39411978 |
catcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccatttctgatcttgaaagacaaaacaaagggttgattagaagagttc |
39411879 |
T |
|
| Q |
113 |
aatctgaaggaaacttggaagacttagcctatgctactactttcaacaacaat |
165 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
39411878 |
aatctgaagggaacttggaagacttagcctatgccactaattgtaacaacaat |
39411826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University