View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13349_high_9 (Length: 214)
Name: NF13349_high_9
Description: NF13349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13349_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 7087933 - 7088126
Alignment:
| Q |
21 |
cacgatgataaagacactcataatcgcaggactgagtttaacattagccggtctcagaagtcaacgttccagccaacagttcgccgttatggtcgcaagt |
120 |
Q |
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| T |
7087933 |
cacgatgataaagacactcataatcgcaggactgagtttaacattagccggtctcagaagtcaacgttccagccaacagttcgccgttatggtcgcaagt |
7088032 |
T |
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| Q |
121 |
tcagttgtggaaatgaagacattgagattatgtgaaataagaacaaacatagcttcccttgtacaccataaaaatacaccttgtacagaaatat |
214 |
Q |
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| T |
7088033 |
tcagttgtggaaatgaagacattgagattatgtgaaataagaacaaacatagcttcccttgtacaccataaaaatacaccttgtacagaaatat |
7088126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 7667678 - 7667881
Alignment:
| Q |
21 |
cacgatgataaagacactcataa-tcgcaggactgagtttaacattagccggtctcagaagtcaacgttccagccaacagttcgccgttatggtcgcaag |
119 |
Q |
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||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7667678 |
cacgacgataaagacactcacaaatcgcaggactgagtttaacattagccggtctcaaaagtcaactttccagccaacagttcgccgttatggtcgcaag |
7667777 |
T |
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| Q |
120 |
ttcagttgtggaaa------tgaagacattgagattatgtgaaataagaaca---aacatagcttcccttgtacaccataaaaatacaccttgtacagaa |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
7667778 |
ttcagttgtggaaataacagtgaagacattgagattatgtgaaagaagaacaaacaacatatcttcccttgtacaccataaaaatacatcttgtacagaa |
7667877 |
T |
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| Q |
211 |
atat |
214 |
Q |
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|||| |
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| T |
7667878 |
atat |
7667881 |
T |
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