View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13349_low_3 (Length: 385)

Name: NF13349_low_3
Description: NF13349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13349_low_3
NF13349_low_3
[»] chr1 (11 HSPs)
chr1 (19-375)||(4872418-4872756)
chr1 (244-300)||(6326689-6326745)
chr1 (244-301)||(14508749-14508806)
chr1 (245-289)||(12535423-12535467)
chr1 (244-300)||(28239162-28239218)
chr1 (245-300)||(12532934-12532989)
chr1 (244-287)||(28231589-28231632)
chr1 (244-289)||(28326411-28326456)
chr1 (148-200)||(677215-677263)
chr1 (245-311)||(12540654-12540720)
chr1 (244-289)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (244-301)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (244-301)||(9066378-9066435)
chr2 (244-285)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (243-295)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 4872418 - 4872756
Alignment:
Q  19 atcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttgttcagaaagatagagatggatcttaacagccttcacgaata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  4872418 atcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttg------------------gatcttaacagccttcacgaata 4872499  T
Q  119 tgttctacaggtacataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagct 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872500 tgttctacaggtacataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagct 4872599  T
Q  219 ttggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagc 318  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4872600 gtggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagc 4872699  T
Q  319 caccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcctttg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4872700 caccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttg 4872756  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 301  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  245 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 289  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 300  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  245 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 300  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagca 287  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 289  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  148 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 200  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  245 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 311  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 289  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 301  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 301  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  244 atctaatctatggctattgcatcctcggtcaatttaaacaag 285  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  243 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 295  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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