View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13349_low_9 (Length: 218)
Name: NF13349_low_9
Description: NF13349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13349_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 45122166 - 45122270
Alignment:
| Q |
102 |
atacatattttttactcggtaataaaatctctacactaacattctttttgagcaatattcaagtgcccgagtgttgatattataaatcaatactaagttc |
201 |
Q |
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| T |
45122166 |
atacatattttttactcagtaataaaatctctacactaacattctttttgagcaatattcaagtggccgagtgttgatattataaatcaatgctaagttc |
45122265 |
T |
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| Q |
202 |
ttctc |
206 |
Q |
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||||| |
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| T |
45122266 |
ttctc |
45122270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 45122028 - 45122085
Alignment:
| Q |
59 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
116 |
Q |
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| T |
45122028 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
45122085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 45121953 - 45121999
Alignment:
| Q |
18 |
gcaatgtatataagaatgatcaagggtaaaaaatgttgggcttataa |
64 |
Q |
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| T |
45121953 |
gcaatgtatataagaatgatcaagggtaaaaaatgttgggcttataa |
45121999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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