View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1334_high_1 (Length: 712)
Name: NF1334_high_1
Description: NF1334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1334_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 26 - 653
Target Start/End: Original strand, 44006216 - 44006837
Alignment:
| Q |
26 |
tgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgattatgt |
125 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006216 |
tgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgattatgt |
44006315 |
T |
|
| Q |
126 |
cattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatcaattgatgtgtgataactcttcattagta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006316 |
cattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatcaattgatgtgtgataactcttcattagta |
44006415 |
T |
|
| Q |
226 |
aaa--gtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggnnnnnnnnnnnngacattcatcaaagtagtatt |
323 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
44006416 |
aaaaagtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggttttttttttttggcattcatcaaagtagtatt |
44006515 |
T |
|
| Q |
324 |
aatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgttggtttgcctccgaataaaa |
423 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
44006516 |
aatatatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctag--------caacattgttggtttgtctccgaataaaa |
44006607 |
T |
|
| Q |
424 |
cctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctat |
523 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006608 |
cctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctat |
44006707 |
T |
|
| Q |
524 |
gactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggac |
623 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006708 |
gactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggac |
44006807 |
T |
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| Q |
624 |
tcggtttactaacgttccacacaggttctg |
653 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
44006808 |
tcggtttactaacgttccacacaggttctg |
44006837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 305 - 577
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
305 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
404 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
405 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
503 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
504 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
577 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |
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|
| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 305 - 602
Target Start/End: Complemental strand, 24147276 - 24146980
Alignment:
| Q |
305 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
404 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
405 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
503 |
Q |
| |
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||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
504 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgctttaaaccc |
602 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || ||||||||||| |||| |
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| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgctttagaccc |
24146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 457
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
305 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
404 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
|
| Q |
405 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
457 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
398 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
447 |
Q |
| |
|
||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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|
| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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